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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260464 through 18771 annotations produced 1 hits



/// (CG42375 /// CG9288):

Annotation Number : CG9288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259721 /// FBgn0260464
Gbrowse : chr3R:9605302-9606517 (+) // 100.0 //
Probeset : 1639307_at
Accessions : protein= NP_001138048; /// NP_650316;, nucleotide= NM_001144576; /// NM_142059;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005960 // glycine cleavage complex // inferred from
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0259721 /// FBgn0260464.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain142 ± 04 of 4 1.00None
Head145 ± 34 of 4 1.00None
Eye257 ± 184 of 4 1.72Up
Thoracicoabdominal ganglion168 ± 94 of 4 1.10None
Salivary gland179 ± 24 of 4 1.20Up
Crop205 ± 14 of 4 1.40Up
Midgut120 ± 74 of 4 0.80Down
Tubule192 ± 84 of 4 1.30Up
Hindgut235 ± 64 of 4 1.60Up
Heart170 ± 94 of 4 1.14None
Fat body133 ± 284 of 4 0.89None
Ovary217 ± 24 of 4 1.50Up
Testis317 ± 114 of 4 2.10Up
Male accessory glands72 ± 94 of 4 0.50Down
Virgin spermatheca128 ± 14 of 4 0.86Down
Mated spermatheca118 ± 54 of 4 0.79Down
Adult carcass178 ± 54 of 4 1.20Up
Larval CNS134 ± 194 of 4 0.90None
Larval Salivary gland118 ± 74 of 4 0.79Down
Larval midgut83 ± 84 of 4 0.56Down
Larval tubule118 ± 84 of 4 0.80Down
Larval hindgut129 ± 64 of 4 0.87None
Larval fat body87 ± 114 of 4 0.60Down
Larval trachea177 ± 54 of 4 1.19Up
Larval carcass159 ± 154 of 4 1.06None
S2 cells (growing)138 ± 44 of 4 0.93None
Whole fly149 ± 34 of 4

Looking for FBgn0260464. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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