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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260467 through 18771 annotations produced 1 hits



/// muted (CG7071 /// muted):

Annotation Number : CG7071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083967 /// FBgn0260467
Gbrowse : chr3R:18188642-18190302 (+) // 100.0 //
Probeset : 1638732_at
Accessions : protein= NP_001036744; /// NP_651027; /// NP_996266;, nucleotide= NM_001043279; /// NM_142770; /// NM_206543;
FlyMine data for FBgn0083967 /// FBgn0260467.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 ± 24 of 4 1.20None
Head111 ± 24 of 4 1.10None
Eye144 ± 54 of 4 1.45Up
Thoracicoabdominal ganglion139 ± 64 of 4 1.40Up
Salivary gland268 ± 114 of 4 2.70Up
Crop129 ± 44 of 4 1.30None
Midgut219 ± 54 of 4 2.20Up
Tubule235 ± 74 of 4 2.40Up
Hindgut248 ± 74 of 4 2.50Up
Heart94 ± 44 of 4 0.95None
Fat body88 ± 34 of 4 0.89None
Ovary125 ± 34 of 4 1.30None
Testis102 ± 24 of 4 1.00None
Male accessory glands113 ± 34 of 4 1.10None
Virgin spermatheca56 ± 34 of 4 0.57Down
Mated spermatheca58 ± 34 of 4 0.59Down
Adult carcass107 ± 94 of 4 1.10None
Larval CNS140 ± 104 of 4 1.41Up
Larval Salivary gland149 ± 104 of 4 1.50Up
Larval midgut128 ± 94 of 4 1.29None
Larval tubule212 ± 44 of 4 2.10Up
Larval hindgut225 ± 24 of 4 2.27Up
Larval fat body138 ± 124 of 4 1.40None
Larval trachea112 ± 84 of 4 1.14None
Larval carcass143 ± 24 of 4 1.45Up
S2 cells (growing)129 ± 34 of 4 1.30None
Whole fly99 ± 104 of 4

Looking for FBgn0260467. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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