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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260468 through 18771 annotations produced 1 hits



/// (CG34317 /// CG7950):

Annotation Number : CG7950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085346 /// FBgn0260468
Gbrowse : chr3R:25882574-25883903 (+) // 100.0 //
Probeset : 1629388_s_at
Accessions : protein= NP_001097977; /// NP_651770; /// NP_733343;, nucleotide= NM_001104507; /// NM_143513; /// NM_170464;
Interpro : 0004540 // ribonuclease activity // inferred from electronic annotation
FlyMine data for FBgn0085346 /// FBgn0260468.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 ± 64 of 4 1.10None
Head109 ± 44 of 4 0.70Down
Eye90 ± 84 of 4 0.60Down
Thoracicoabdominal ganglion185 ± 44 of 4 1.20Up
Salivary gland95 ± 14 of 4 0.63Down
Crop113 ± 34 of 4 0.70Down
Midgut130 ± 14 of 4 0.90None
Tubule176 ± 74 of 4 1.20Up
Hindgut134 ± 44 of 4 0.90None
Heart145 ± 84 of 4 0.96None
Fat body124 ± 164 of 4 0.82None
Ovary246 ± 34 of 4 1.60Up
Testis91 ± 64 of 4 0.60Down
Male accessory glands155 ± 54 of 4 1.00None
Virgin spermatheca115 ± 54 of 4 0.77Down
Mated spermatheca129 ± 84 of 4 0.86None
Adult carcass125 ± 54 of 4 0.80None
Larval CNS209 ± 134 of 4 1.39Up
Larval Salivary gland126 ± 34 of 4 0.83None
Larval midgut98 ± 114 of 4 0.65Down
Larval tubule61 ± 34 of 4 0.40Down
Larval hindgut105 ± 64 of 4 0.70Down
Larval fat body88 ± 93 of 4 0.60Down
Larval trachea123 ± 144 of 4 0.82None
Larval carcass100 ± 114 of 4 0.66Down
S2 cells (growing)162 ± 74 of 4 1.07None
Whole fly151 ± 84 of 4

Looking for FBgn0260468. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime