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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260477 through 18771 annotations produced 1 hits



(CG30283):

Annotation Number : CG30283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260477
Gbrowse : chr2R:17427088-17428078 (-) // 100.0 //
Probeset : 1624816_at
Accessions : protein= NP_611587;, nucleotide= NM_137743;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0260477.
Homophila reports that CG30283 is a close match (8e-11) to human gene F9;HEMB (NP_000124), a gene associated with Hemophilia B, 306900 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.50None
Head2 ± 00 of 4 1.50None
Eye3 ± 10 of 4 2.53None
Thoracicoabdominal ganglion2 ± 00 of 4 1.60None
Salivary gland357 ± 74 of 4259.76Up
Crop9 ± 30 of 4 6.80None
Midgut14 ± 20 of 410.50Up
Tubule4 ± 10 of 4 3.10Up
Hindgut8 ± 20 of 4 6.00None
Heart3 ± 00 of 4 2.69None
Fat body15 ± 41 of 411.51Up
Ovary1 ± 00 of 4 1.40None
Testis4 ± 10 of 4 3.10None
Male accessory glands6 ± 30 of 4 4.70None
Virgin spermatheca6 ± 20 of 4 4.93None
Mated spermatheca6 ± 10 of 4 4.82Up
Adult carcass5 ± 20 of 4 4.00None
Larval CNS3 ± 10 of 4 2.47None
Larval Salivary gland108 ± 124 of 478.64Up
Larval midgut12 ± 20 of 4 9.38Up
Larval tubule15 ± 41 of 410.90None
Larval hindgut2 ± 00 of 4 1.71Up
Larval fat body23 ± 32 of 417.00Up
Larval trachea3 ± 00 of 4 2.36Up
Larval carcass5 ± 10 of 4 3.93None
S2 cells (growing)1 ± 00 of 4 1.05None
Whole fly1 ± 00 of 4

Looking for FBgn0260477. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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