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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260479 through 18771 annotations produced 1 hits



Adult cuticle protein 1 /// /// (Acp1 /// CG13796 /// CG31904):

Annotation Number : CG7216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014454 /// FBgn0260479
Gbrowse : chr2L:7740551-7741542 (-) // 100.0 // /// chr2L:7734411-7735206 (-) // 91.07 //
Probeset : 1641474_s_at
Accessions : protein= NP_477115; /// NP_723310; /// NP_723311;, nucleotide= NM_057767; /// NM_164768; /// NM_164769;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
FlyMine data for FBgn0014454 /// FBgn0260479.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00None
Head111 144 of 4 2.40Up
Eye246 444 of 4 5.34Up
Thoracicoabdominal ganglion7 12 of 4 0.20None
Salivary gland19 41 of 4 0.42None
Crop6 20 of 4 0.10None
Midgut2 10 of 4 0.10None
Tubule6 10 of 4 0.10Down
Hindgut7 10 of 4 0.20None
Heart405 3554 of 4 8.76None
Fat body22 73 of 4 0.49None
Ovary1 00 of 4 0.00None
Testis3 00 of 4 0.10None
Male accessory glands4 10 of 4 0.10None
Virgin spermatheca5 10 of 4 0.12None
Mated spermatheca7 20 of 4 0.17None
Adult carcass251 684 of 4 5.40None
Larval CNS4 10 of 4 0.09None
Larval Salivary gland5 10 of 4 0.12None
Larval midgut7 30 of 4 0.16None
Larval tubule7 20 of 4 0.20None
Larval hindgut5 10 of 4 0.12None
Larval fat body5 10 of 4 0.10None
Larval trachea3584 5464 of 477.55Up
Larval carcass32 84 of 4 0.70None
S2 cells (growing)2 10 of 4 0.06None
Whole fly46 144 of 4

Looking for FBgn0260479. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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