FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260479 through 18771 annotations produced 1 hits

Adult cuticle protein 1 /// /// (Acp1 /// CG13796 /// CG31904):

Annotation Number : CG7216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014454 /// FBgn0260479
Gbrowse : chr2L:7740551-7741542 (-) // 100.0 // /// chr2L:7734411-7735206 (-) // 91.07 //
Probeset : 1641474_s_at
Accessions : protein= NP_477115; /// NP_723310; /// NP_723311;, nucleotide= NM_057767; /// NM_164768; /// NM_164769;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
FlyMine data for FBgn0014454 /// FBgn0260479.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.00	None
Head	111 ± 14	4 of 4	2.40	Up
Eye	246 ± 44	4 of 4	5.34	Up
Thoracicoabdominal ganglion	7 ± 1	2 of 4	0.20	None
Salivary gland	19 ± 4	1 of 4	0.42	None
Crop	6 ± 2	0 of 4	0.10	None
Midgut	2 ± 1	0 of 4	0.10	None
Tubule	6 ± 1	0 of 4	0.10	Down
Hindgut	7 ± 1	0 of 4	0.20	None
Heart	405 ± 355	4 of 4	8.76	None
Fat body	22 ± 7	3 of 4	0.49	None
Ovary	1 ± 0	0 of 4	0.00	None
Testis	3 ± 0	0 of 4	0.10	None
Male accessory glands	4 ± 1	0 of 4	0.10	None
Virgin spermatheca	5 ± 1	0 of 4	0.12	None
Mated spermatheca	7 ± 2	0 of 4	0.17	None
Adult carcass	251 ± 68	4 of 4	5.40	None
Larval CNS	4 ± 1	0 of 4	0.09	None
Larval Salivary gland	5 ± 1	0 of 4	0.12	None
Larval midgut	7 ± 3	0 of 4	0.16	None
Larval tubule	7 ± 2	0 of 4	0.20	None
Larval hindgut	5 ± 1	0 of 4	0.12	None
Larval fat body	5 ± 1	0 of 4	0.10	None
Larval trachea	3584 ± 546	4 of 4	77.55	Up
Larval carcass	32 ± 8	4 of 4	0.70	None
S2 cells (growing)	2 ± 1	0 of 4	0.06	None
Whole fly	46 ± 14	4 of 4

Looking for FBgn0260479. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720