FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260487 through 18771 annotations produced 3 hits

CG13980 (CG42534):

Annotation Number : CG14264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260487
Gbrowse : chr3R:23166343-23166994 (+) // 100.0 //
Probeset : 1638961_at
Accessions : protein= NP_651560;, nucleotide= NM_143303;
FlyMine data for FBgn0260487.
TRiP has 2 RNAi stocks for FBgn0260487 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260487 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.50	None
Head	1 ± 0	0 of 4	0.20	None
Eye	5 ± 1	0 of 4	1.15	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.60	None
Salivary gland	14 ± 4	0 of 4	2.99	None
Crop	7 ± 2	0 of 4	1.60	None
Midgut	7 ± 2	0 of 4	1.50	None
Tubule	3 ± 1	0 of 4	0.70	None
Hindgut	5 ± 2	0 of 4	1.20	None
Heart	3 ± 1	1 of 4	0.78	None
Fat body	4 ± 3	0 of 4	1.02	None
Ovary	2 ± 0	0 of 4	0.50	None
Testis	3 ± 1	0 of 4	0.80	None
Male accessory glands	1 ± 0	0 of 4	0.30	None
Virgin spermatheca	16 ± 0	0 of 4	3.44	Up
Mated spermatheca	16 ± 5	0 of 4	3.44	None
Adult carcass	5 ± 1	0 of 4	1.10	None
Larval CNS	7 ± 3	1 of 4	1.66	None
Larval Salivary gland	8 ± 1	0 of 4	1.78	None
Larval midgut	8 ± 2	0 of 4	1.71	None
Larval tubule	2 ± 1	0 of 4	0.60	None
Larval hindgut	4 ± 1	0 of 4	0.93	None
Larval fat body	2 ± 1	0 of 4	0.60	None
Larval trachea	6 ± 2	0 of 4	1.47	None
Larval carcass	7 ± 1	0 of 4	1.63	None
S2 cells (growing)	2 ± 1	0 of 4	0.47	None
Whole fly	4 ± 1	0 of 4

CG13980 (CG42534):

Annotation Number : CG6599
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260487
Gbrowse : chr3R:23185111-23190052 (+) // 100.0 //
Probeset : 1631824_at
Accessions : protein= NP_651560;, nucleotide= NM_143303;
FlyMine data for FBgn0260487.
Homophila reports that CG6599 is a close match (1e-11) to human gene HPC1;PRCA1;RNASEL;RNS4 (NP_066956), a gene associated with Prostate cancer 1, 176807, 601518 (3).
TRiP has 2 RNAi stocks for FBgn0260487 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260487 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	2.50	None
Head	3 ± 1	0 of 4	2.70	None
Eye	3 ± 2	0 of 4	2.87	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	1.70	None
Salivary gland	1 ± 0	0 of 4	1.09	None
Crop	3 ± 1	0 of 4	2.90	None
Midgut	3 ± 2	0 of 4	3.30	None
Tubule	1 ± 0	0 of 4	1.40	None
Hindgut	1 ± 0	0 of 4	1.50	None
Heart	1 ± 1	0 of 4	1.63	None
Fat body	1 ± 0	0 of 4	1.04	None
Ovary	2 ± 1	0 of 4	1.70	None
Testis	1 ± 0	0 of 4	0.90	None
Male accessory glands	2 ± 1	0 of 4	2.40	None
Virgin spermatheca	3 ± 1	0 of 4	2.61	None
Mated spermatheca	1 ± 0	0 of 4	1.30	None
Adult carcass	2 ± 1	0 of 4	1.80	None
Larval CNS	2 ± 2	0 of 4	2.43	None
Larval Salivary gland	3 ± 1	0 of 4	3.15	None
Larval midgut	1 ± 0	0 of 4	1.24	None
Larval tubule	0 ± 0	0 of 4	0.70	None
Larval hindgut	2 ± 1	0 of 4	2.35	None
Larval fat body	1 ± 0	0 of 4	1.70	None
Larval trachea	3 ± 2	0 of 4	3.17	None
Larval carcass	2 ± 1	0 of 4	2.37	None
S2 cells (growing)	1 ± 0	0 of 4	1.22	None
Whole fly	1 ± 0	0 of 4

CG13980 (CG42534):

Annotation Number : CG13980
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260487
Gbrowse : chr3R:23194866-23196702 (+) // 100.0 //
Probeset : 1631709_at
Accessions : protein= NP_651560;, nucleotide= NM_143303;
FlyMine data for FBgn0260487.
TRiP has 2 RNAi stocks for FBgn0260487 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260487 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.50	None
Head	2 ± 2	0 of 4	2.60	None
Eye	0 ± 0	0 of 4	0.62	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.80	None
Salivary gland	1 ± 0	0 of 4	1.10	None
Crop	0 ± 0	0 of 4	0.80	None
Midgut	1 ± 0	0 of 4	1.40	None
Tubule	0 ± 0	0 of 4	0.60	Down
Hindgut	1 ± 0	0 of 4	1.10	None
Heart	0 ± 0	0 of 4	0.51	None
Fat body	0 ± 0	0 of 4	0.67	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	3 ± 1	0 of 4	3.40	None
Male accessory glands	1 ± 0	0 of 4	1.00	None
Virgin spermatheca	0 ± 0	0 of 4	0.72	None
Mated spermatheca	1 ± 0	0 of 4	1.05	None
Adult carcass	1 ± 0	0 of 4	1.00	None
Larval CNS	0 ± 0	0 of 4	0.33	None
Larval Salivary gland	0 ± 0	0 of 4	0.92	None
Larval midgut	2 ± 0	0 of 4	2.21	None
Larval tubule	0 ± 0	0 of 4	0.60	None
Larval hindgut	0 ± 0	0 of 4	0.51	None
Larval fat body	1 ± 0	0 of 4	1.60	None
Larval trachea	0 ± 0	0 of 4	0.92	None
Larval carcass	1 ± 0	0 of 4	1.18	None
S2 cells (growing)	0 ± 0	0 of 4	0.79	None
Whole fly	1 ± 0	0 of 4

Looking for FBgn0260487. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720