FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260499 through 18771 annotations produced 3 hits

quiver (qvr):

Annotation Number : S.C2R000881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260499
Gbrowse : chr2R:7332188-7335255 (+) // 100.0 //
Probeset : 1638713_at
Accessions : protein= NP_001137646;, nucleotide= NM_001144174;
Pathway : cholinergic // inferred from mutant phenotype /// 0045187 // regulation of circadian sleep/wake cycle
Interpro : sleep // inferred from mutant phenotype /// 0045938 // positive regulation of circadian sleep/wake cycle
FlyMine data for FBgn0260499.
VDRC has 2 RNAi stocks for FBgn0260499 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	59 ± 7	4 of 4	42.40	Up
Head	8 ± 3	2 of 4	6.10	None
Eye	10 ± 1	1 of 4	7.32	Up
Thoracicoabdominal ganglion	16 ± 7	3 of 4	11.70	None
Salivary gland	9 ± 0	0 of 4	6.88	Up
Crop	4 ± 2	0 of 4	2.90	None
Midgut	4 ± 1	0 of 4	3.20	None
Tubule	2 ± 0	0 of 4	1.70	Up
Hindgut	3 ± 1	0 of 4	2.50	None
Heart	0 ± 0	0 of 4	0.66	None
Fat body	0 ± 0	0 of 4	0.63	None
Ovary	0 ± 0	0 of 4	0.60	None
Testis	2 ± 1	0 of 4	1.50	None
Male accessory glands	1 ± 0	0 of 4	0.80	None
Virgin spermatheca	3 ± 0	0 of 4	2.48	None
Mated spermatheca	3 ± 1	0 of 4	2.14	None
Adult carcass	9 ± 3	0 of 4	6.90	None
Larval CNS	3 ± 1	0 of 4	2.20	None
Larval Salivary gland	2 ± 0	0 of 4	2.07	None
Larval midgut	3 ± 2	0 of 4	2.66	None
Larval tubule	1 ± 1	0 of 4	1.30	None
Larval hindgut	0 ± 0	0 of 4	0.43	None
Larval fat body	1 ± 0	0 of 4	0.70	None
Larval trachea	0 ± 0	0 of 4	0.41	None
Larval carcass	1 ± 0	0 of 4	1.16	None
S2 cells (growing)	1 ± 0	0 of 4	0.82	None
Whole fly	1 ± 0	0 of 4

quiver (qvr):

Annotation Number : S.C2R000881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260499
Gbrowse : chr2R:7332188-7335255 (+) // 100.0 //
Probeset : 1627019_s_at
Accessions : protein= NP_001137646;, nucleotide= NM_001144174;
Pathway : cholinergic // inferred from mutant phenotype /// 0045187 // regulation of circadian sleep/wake cycle
Interpro : sleep // inferred from mutant phenotype /// 0045938 // positive regulation of circadian sleep/wake cycle
FlyMine data for FBgn0260499.
VDRC has 2 RNAi stocks for FBgn0260499 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	119 ± 7	4 of 4	23.30	Up
Head	27 ± 8	3 of 4	5.40	None
Eye	23 ± 4	4 of 4	4.50	Up
Thoracicoabdominal ganglion	38 ± 14	3 of 4	7.50	None
Salivary gland	7 ± 2	0 of 4	1.41	None
Crop	2 ± 1	0 of 4	0.50	None
Midgut	1 ± 0	0 of 4	0.20	None
Tubule	1 ± 0	0 of 4	0.30	Down
Hindgut	1 ± 0	0 of 4	0.30	None
Heart	0 ± 0	0 of 4	0.07	None
Fat body	0 ± 0	0 of 4	0.17	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	0 ± 0	0 of 4	0.10	None
Male accessory glands	4 ± 2	0 of 4	0.90	None
Virgin spermatheca	0 ± 0	0 of 4	0.10	None
Mated spermatheca	1 ± 0	0 of 4	0.21	None
Adult carcass	2 ± 0	0 of 4	0.40	None
Larval CNS	11 ± 2	2 of 4	2.17	None
Larval Salivary gland	0 ± 0	0 of 4	0.14	None
Larval midgut	0 ± 0	0 of 4	0.17	None
Larval tubule	3 ± 1	0 of 4	0.60	None
Larval hindgut	0 ± 0	0 of 4	0.17	None
Larval fat body	3 ± 2	0 of 4	0.60	None
Larval trachea	1 ± 0	0 of 4	0.22	None
Larval carcass	2 ± 0	0 of 4	0.48	None
S2 cells (growing)	0 ± 0	0 of 4	0.11	None
Whole fly	5 ± 2	1 of 4

quiver (qvr):

Annotation Number : CG30032
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260499
Gbrowse : chr2R:7330030-7339119 (+) // 100.0 //
Probeset : 1635961_at
Accessions : protein= NP_001137646;, nucleotide= NM_001144174;
Pathway : cholinergic // inferred from mutant phenotype /// 0045187 // regulation of circadian sleep/wake cycle
Interpro : sleep // inferred from mutant phenotype /// 0045938 // positive regulation of circadian sleep/wake cycle
FlyMine data for FBgn0260499.
VDRC has 2 RNAi stocks for FBgn0260499 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1338 ± 49	4 of 4	24.30	Up
Head	387 ± 12	4 of 4	7.00	Up
Eye	692 ± 66	4 of 4	12.58	Up
Thoracicoabdominal ganglion	1262 ± 16	4 of 4	22.90	Up
Salivary gland	2 ± 1	0 of 4	0.05	Down
Crop	9 ± 1	1 of 4	0.20	Down
Midgut	5 ± 1	0 of 4	0.10	Down
Tubule	1 ± 0	0 of 4	0.00	Down
Hindgut	14 ± 1	3 of 4	0.30	Down
Heart	11 ± 1	4 of 4	0.22	Down
Fat body	4 ± 1	0 of 4	0.08	Down
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	2 ± 0	0 of 4	0.00	Down
Male accessory glands	9 ± 2	0 of 4	0.20	Down
Virgin spermatheca	3 ± 1	0 of 4	0.06	Down
Mated spermatheca	2 ± 0	0 of 4	0.05	Down
Adult carcass	70 ± 9	4 of 4	1.30	None
Larval CNS	205 ± 23	4 of 4	3.72	Up
Larval Salivary gland	2 ± 0	0 of 4	0.04	Down
Larval midgut	2 ± 0	0 of 4	0.04	Down
Larval tubule	6 ± 1	0 of 4	0.10	Down
Larval hindgut	1 ± 0	0 of 4	0.03	Down
Larval fat body	3 ± 1	0 of 4	0.10	Down
Larval trachea	12 ± 17	1 of 4	0.23	Down
Larval carcass	10 ± 1	0 of 4	0.19	Down
S2 cells (growing)	2 ± 0	0 of 4	0.05	Down
Whole fly	55 ± 5	4 of 4

Looking for FBgn0260499. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720