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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260632 through 18771 annotations produced 2 hits



(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG6667
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : dl
Gbrowse :
Probeset : 1639692_s_at
Accessions : protein= C7LA93 /// P15330, nucleotide=
FlyMine data for dl.
BioGrid reports that CG6667 interacts with CG6707 CG7583 CG8965 CG9453 CG5848 CG5848 CG6794 CG17603 CG9224 Dmel CG33957 CG3018 CG4494 CG15367 CG9771 CG12767 CG3018 CG2956 CG5848 CG4057 CG4057 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 14 of 4 0.10Down
Head104 34 of 4 0.60Down
Eye88 34 of 4 0.51Down
Thoracicoabdominal ganglion34 14 of 4 0.20Down
Salivary gland616 234 of 4 3.52Up
Crop834 354 of 4 4.80Up
Midgut181 44 of 4 1.00None
Tubule78 54 of 4 0.40Down
Hindgut273 74 of 4 1.60Up
Heart25 24 of 4 0.14Down
Fat body22 71 of 4 0.13Down
Ovary367 24 of 4 2.10Up
Testis48 34 of 4 0.30Down
Male accessory glands22 33 of 4 0.10Down
Virgin spermatheca82 34 of 4 0.47Down
Mated spermatheca93 114 of 4 0.53Down
Adult carcass123 64 of 4 0.70Down
Larval CNS34 84 of 4 0.19Down
Larval Salivary gland199 194 of 4 1.14None
Larval midgut260 64 of 4 1.48Up
Larval tubule47 44 of 4 0.30Down
Larval hindgut118 14 of 4 0.68Down
Larval fat body54 44 of 4 0.30Down
Larval trachea231 224 of 4 1.32Up
Larval carcass111 144 of 4 0.64Down
S2 cells (growing)344 44 of 4 1.97Up
Whole fly175 84 of 4



(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG6667
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : dl
Gbrowse :
Probeset : 1623415_at
Accessions : protein= C7LA93 /// P15330, nucleotide=
FlyMine data for dl.
BioGrid reports that CG6667 interacts with CG6707 CG7583 CG8965 CG9453 CG5848 CG5848 CG6794 CG17603 CG9224 Dmel CG33957 CG3018 CG4494 CG15367 CG9771 CG12767 CG3018 CG2956 CG5848 CG4057 CG4057 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 0.40Down
Head87 54 of 4 1.20None
Eye24 24 of 4 0.35Down
Thoracicoabdominal ganglion42 24 of 4 0.60Down
Salivary gland42 92 of 4 0.59None
Crop432 124 of 4 6.10Up
Midgut71 54 of 4 1.00None
Tubule23 43 of 4 0.30Down
Hindgut191 74 of 4 2.70Up
Heart250 224 of 4 3.54Up
Fat body26 93 of 4 0.38Down
Ovary8 03 of 4 0.10Down
Testis15 04 of 4 0.20Down
Male accessory glands41 44 of 4 0.60Down
Virgin spermatheca32 24 of 4 0.46Down
Mated spermatheca45 44 of 4 0.64Down
Adult carcass207 74 of 4 2.90Up
Larval CNS30 44 of 4 0.43Down
Larval Salivary gland23 34 of 4 0.34Down
Larval midgut38 44 of 4 0.54Down
Larval tubule12 04 of 4 0.20Down
Larval hindgut102 54 of 4 1.45Up
Larval fat body23 43 of 4 0.30Down
Larval trachea37 44 of 4 0.53Down
Larval carcass406 64 of 4 5.75Up
S2 cells (growing)133 84 of 4 1.88Up
Whole fly70 74 of 4

Looking for FBgn0260632. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime