FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260634 through 18771 annotations produced 2 hits

/// off-schedule (CG33111 /// eIF4G2):

Annotation Number : CT37107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053111 /// FBgn0260634
Gbrowse : chr3R:19643948-19644937 (-) // 100.0 //
Probeset : 1634488_s_at
Accessions : protein= NP_001014646; /// NP_788725; /// NP_996272;, nucleotide= NM_001014646; /// NM_176548; /// NM_206549;
Pathway : 0016281 // eukaryotic translation initiation factor 4F complex // inferred from sequence similarity
Interpro : 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0003743 // translation initiation factor
FlyMine data for FBgn0053111 /// FBgn0260634.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 1	4 of 4	1.00	None
Head	12 ± 1	4 of 4	0.90	None
Eye	5 ± 2	1 of 4	0.38	Down
Thoracicoabdominal ganglion	11 ± 1	0 of 4	0.90	None
Salivary gland	16 ± 6	1 of 4	1.25	None
Crop	28 ± 1	4 of 4	2.20	Up
Midgut	28 ± 2	4 of 4	2.10	Up
Tubule	9 ± 1	0 of 4	0.70	Down
Hindgut	30 ± 2	4 of 4	2.30	Up
Heart	13 ± 1	3 of 4	0.97	None
Fat body	9 ± 3	0 of 4	0.74	None
Ovary	16 ± 0	4 of 4	1.30	Up
Testis	18 ± 1	4 of 4	1.40	None
Male accessory glands	18 ± 1	1 of 4	1.40	Up
Virgin spermatheca	6 ± 1	1 of 4	0.47	Down
Mated spermatheca	6 ± 2	0 of 4	0.51	Down
Adult carcass	11 ± 2	0 of 4	0.90	None
Larval CNS	8 ± 1	4 of 4	0.63	Down
Larval Salivary gland	29 ± 1	4 of 4	2.24	Up
Larval midgut	17 ± 1	3 of 4	1.34	None
Larval tubule	56 ± 2	4 of 4	4.20	Up
Larval hindgut	25 ± 1	4 of 4	1.87	Up
Larval fat body	28 ± 1	4 of 4	2.10	Up
Larval trachea	25 ± 3	4 of 4	1.90	Up
Larval carcass	29 ± 3	4 of 4	2.22	Up
S2 cells (growing)	53 ± 3	4 of 4	4.03	Up
Whole fly	13 ± 0	3 of 4

off-schedule (eIF4G2):

Annotation Number : CG10192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260634
Gbrowse : chr3R:19635549-19642733 (-) // 99.97 //
Probeset : 1637987_at
Accessions : protein= NP_651188;, nucleotide= NM_142931;
Pathway : 0016281 // eukaryotic translation initiation factor 4F complex // inferred from sequence or structural similarity
Interpro : 0000340 // RNA 7-methylguanosine cap binding // inferred from direct assay /// 0003743 // translation initiation factor
FlyMine data for FBgn0260634.
BioGrid reports that CG10192 interacts with CG13067 CG13157 CG13427 CG13512 CG13857 CG14549 CG14563 CG14996 CG1548 CG17018 CG17828 CG18102 CG1900 CG31973 CG3510 CG3548 CG3589 CG3798 CG3961 CG3972 CG40160 CG4818 CG4998 CG6684 CG6933 CG7548 CG7570 CG7725 CG8251 CG8947 CG33197 .
TRiP has 1 RNAi stocks for FBgn0260634 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260634 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	596 ± 16	4 of 4	2.20	Up
Head	162 ± 6	4 of 4	0.60	Down
Eye	179 ± 21	4 of 4	0.66	Down
Thoracicoabdominal ganglion	585 ± 10	4 of 4	2.10	Up
Salivary gland	351 ± 14	4 of 4	1.29	Up
Crop	98 ± 7	4 of 4	0.40	Down
Midgut	171 ± 7	4 of 4	0.60	Down
Tubule	200 ± 5	4 of 4	0.70	Down
Hindgut	149 ± 3	4 of 4	0.50	Down
Heart	118 ± 6	4 of 4	0.43	Down
Fat body	82 ± 14	4 of 4	0.30	Down
Ovary	541 ± 7	4 of 4	2.00	Up
Testis	1909 ± 47	4 of 4	7.00	Up
Male accessory glands	500 ± 16	4 of 4	1.80	Up
Virgin spermatheca	92 ± 4	4 of 4	0.34	Down
Mated spermatheca	98 ± 8	4 of 4	0.36	Down
Adult carcass	87 ± 5	4 of 4	0.30	Down
Larval CNS	706 ± 42	4 of 4	2.59	Up
Larval Salivary gland	153 ± 4	4 of 4	0.56	Down
Larval midgut	148 ± 9	4 of 4	0.54	Down
Larval tubule	347 ± 18	4 of 4	1.30	Up
Larval hindgut	138 ± 6	4 of 4	0.51	Down
Larval fat body	269 ± 97	4 of 4	1.00	None
Larval trachea	182 ± 24	4 of 4	0.67	Down
Larval carcass	109 ± 9	4 of 4	0.40	Down
S2 cells (growing)	325 ± 6	4 of 4	1.19	Up
Whole fly	273 ± 15	4 of 4

Looking for FBgn0260634. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720