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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0260635 through 18771 annotations produced 1 hits

thread (th):

Annotation Number : CG12284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260635
Gbrowse : chr3L:16031504-16043755 (-) // 100.0 //
Probeset : 1636787_s_at
Accessions : protein= NP_524101; /// NP_730097; /// NP_730098;, nucleotide= NM_079377; /// NM_168644; /// NM_168645;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // traceable author statement /// 0005515 // protein binding // inferred fr
FlyMine data for FBgn0260635.
Homophila reports that CG12284 is a close match (1e-28) to human gene API3;BIRC4;XIAP;XLP2 (NP_001158), a gene associated with Lymphoproliferative syndrome, X-linked, 2, 300635 (3).
BioGrid reports that CG12284 interacts with CG32772 CG4554 CG7417 CG9949 CG2189 CG6829 CG6829 CG6829 CG6829 CG6829 CG6829 CG8238 CG18188 CG5370 CG6203 CG1274 CG8091 CG8091 CG8091 CG8091 CG8091 CG8091 CG8091 CG8091 CG8091 CG8091 CG18803 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG5123 CG4531 CG7425 CG12919 CG12919 CG12919 CG12919 CG4345 CG4345 CG4345 CG4345 CG4345 CG4345 CG15437 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG4319 CG1274 CG1274 .
TRiP has 1 RNAi stocks for FBgn0260635 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain803 74 of 4 1.90Up
Head647 434 of 4 1.50Up
Eye432 84 of 4 1.01None
Thoracicoabdominal ganglion786 254 of 4 1.80Up
Salivary gland935 264 of 4 2.19Up
Crop1381 214 of 4 3.20Up
Midgut803 174 of 4 1.90Up
Tubule1023 1164 of 4 2.40Up
Hindgut831 184 of 4 1.90Up
Heart805 184 of 4 1.89Up
Fat body813 414 of 4 1.91Up
Ovary259 94 of 4 0.60Down
Testis381 44 of 4 0.90Down
Male accessory glands685 314 of 4 1.60Up
Virgin spermatheca1051 714 of 4 2.47Up
Mated spermatheca1114 334 of 4 2.61Up
Adult carcass969 304 of 4 2.30Up
Larval CNS926 184 of 4 2.17Up
Larval Salivary gland1033 344 of 4 2.42Up
Larval midgut1576 884 of 4 3.70Up
Larval tubule1084 314 of 4 2.50Up
Larval hindgut552 294 of 4 1.30Up
Larval fat body687 384 of 4 1.60Up
Larval trachea541 434 of 4 1.27Up
Larval carcass621 644 of 4 1.46None
S2 cells (growing)1101 214 of 4 2.58Up
Whole fly426 94 of 4

Looking for FBgn0260635. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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