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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260639 through 18771 annotations produced 1 hits



gamma-tubulin (gammaTub23C):

Annotation Number : CG3157
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260639
Gbrowse : chr2L:2972891-2974862 (+) // 100.0 //
Probeset : 1626125_at
Accessions : protein= NP_476804;, nucleotide= NM_057456;
Pathway : 0000930 // gamma-tubulin complex // inferred from physical interaction /// 0000931 // gamma-tubulin large complex // inf
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0260639.
Homophila reports that CG3157 is a close match (3e-59) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
BioGrid reports that CG3157 interacts with CG3917 CG5688 CG10988 .
TRiP has 2 RNAi stocks for FBgn0260639 available for purchase.
VDRC has 3 RNAi stocks for FBgn0260639 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 24 of 4 2.50Up
Head76 34 of 4 1.00None
Eye78 34 of 4 1.02None
Thoracicoabdominal ganglion207 44 of 4 2.70Up
Salivary gland21 23 of 4 0.28Down
Crop90 24 of 4 1.20None
Midgut36 24 of 4 0.50Down
Tubule32 14 of 4 0.40Down
Hindgut70 34 of 4 0.90None
Heart55 24 of 4 0.72None
Fat body30 24 of 4 0.40Down
Ovary201 104 of 4 2.60Up
Testis83 14 of 4 1.10None
Male accessory glands17 04 of 4 0.20Down
Virgin spermatheca15 14 of 4 0.20Down
Mated spermatheca20 13 of 4 0.27Down
Adult carcass50 34 of 4 0.70Down
Larval CNS361 144 of 4 4.69Up
Larval Salivary gland21 04 of 4 0.28Down
Larval midgut29 24 of 4 0.39Down
Larval tubule54 24 of 4 0.70None
Larval hindgut80 24 of 4 1.05None
Larval fat body59 44 of 4 0.80None
Larval trachea123 134 of 4 1.61Up
Larval carcass80 84 of 4 1.04None
S2 cells (growing)272 64 of 4 3.54Up
Whole fly77 84 of 4

Looking for FBgn0260639. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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