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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0260642 through 18771 annotations produced 3 hits


Antennapedia (Antp):

Annotation Number : CG1028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260642
Gbrowse : chr3R:2721974-2826277 (-) // 100.0 //
Probeset : 1624759_s_at
Accessions : protein= NP_996166; /// NP_996167; /// NP_996168; /// NP_996169; /// NP_996170; /// NP_996171; /// NP_996172; /// NP_996173; /// NP_996174; /// NP_996175; /// NP_996176;, nucleotide= NM_206444; /// NM_206445; /// NM_206446; /// NM_206447; /// NM_206448; /// NM_206449; /// NM_206450; /// NM_206451; /// NM_206452; /// NM_206453; /// NM_206454;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : antennal segment // inferred from mutant phenotype /// 0007384 // specification of segmental identity
FlyMine data for FBgn0260642.
Homophila reports that CG1028 is a close match (4e-11) to human gene IPF1 (NP_000200), a gene associated with MODY, type IV (3);Pancreatic agenesis, 260370 (3);{Diabetes mellitus, type II, susceptibility to}, 125853 (3).
BioGrid reports that CG1028 interacts with CG15120 CG16985 CG4623 CG6416 CG9665 CG3938 CG12223 CG32443 CG5109 CG1030 CG1030 CG1030 CG1030 CG1030 CG1064 CG10388 CG10388 CG10388 CG10388 CG10388 CG10388 CG6677 CG5942 CG10595 CG1464 CG17117 CG17117 CG17117 CG1264 CG1264 CG18740 CG7467 CG18497 CG18497 CG7958 CG7958 .
TRiP has 1 RNAi stocks for FBgn0260642 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 04 of 4 0.50None
Head6 ± 03 of 4 0.50None
Eye2 ± 00 of 4 0.22Down
Thoracicoabdominal ganglion468 ± 294 of 434.90Up
Salivary gland14 ± 10 of 4 1.07None
Crop13 ± 23 of 4 1.00None
Midgut11 ± 14 of 4 0.90None
Tubule8 ± 13 of 4 0.70Down
Hindgut28 ± 34 of 4 2.10Up
Heart24 ± 24 of 4 1.80Up
Fat body35 ± 114 of 4 2.61Up
Ovary2 ± 01 of 4 0.20Down
Testis4 ± 02 of 4 0.30Down
Male accessory glands9 ± 31 of 4 0.70None
Virgin spermatheca20 ± 14 of 4 1.50None
Mated spermatheca22 ± 24 of 4 1.69Up
Adult carcass32 ± 34 of 4 2.40Up
Larval CNS255 ± 354 of 419.02Up
Larval Salivary gland4 ± 22 of 4 0.36Down
Larval midgut14 ± 14 of 4 1.11None
Larval tubule4 ± 11 of 4 0.30Down
Larval hindgut13 ± 04 of 4 1.01None
Larval fat body107 ± 74 of 4 8.00Up
Larval trachea232 ± 654 of 417.32Up
Larval carcass35 ± 44 of 4 2.67Up
S2 cells (growing)2 ± 01 of 4 0.22Down
Whole fly13 ± 24 of 4


Antennapedia (Antp):

Annotation Number : CG1028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260642
Gbrowse : chr3R:2732739-2758538 (-) // 100.0 //
Probeset : 1638665_at
Accessions : protein= NP_996166; /// NP_996167; /// NP_996168; /// NP_996169; /// NP_996170; /// NP_996171; /// NP_996172; /// NP_996173; /// NP_996174; /// NP_996175; /// NP_996176;, nucleotide= NM_206444; /// NM_206445; /// NM_206446; /// NM_206447; /// NM_206448; /// NM_206449; /// NM_206450; /// NM_206451; /// NM_206452; /// NM_206453; /// NM_206454;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : antennal segment // inferred from mutant phenotype /// 0007384 // specification of segmental identity
FlyMine data for FBgn0260642.
Homophila reports that CG1028 is a close match (4e-11) to human gene IPF1 (NP_000200), a gene associated with MODY, type IV (3);Pancreatic agenesis, 260370 (3);{Diabetes mellitus, type II, susceptibility to}, 125853 (3).
BioGrid reports that CG1028 interacts with CG15120 CG16985 CG4623 CG6416 CG9665 CG3938 CG12223 CG32443 CG5109 CG1030 CG1030 CG1030 CG1030 CG1030 CG1064 CG10388 CG10388 CG10388 CG10388 CG10388 CG10388 CG6677 CG5942 CG10595 CG1464 CG17117 CG17117 CG17117 CG1264 CG1264 CG18740 CG7467 CG18497 CG18497 CG7958 CG7958 .
TRiP has 1 RNAi stocks for FBgn0260642 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.60None
Head5 ± 12 of 4 1.20None
Eye1 ± 11 of 4 0.43None
Thoracicoabdominal ganglion5 ± 21 of 4 1.30None
Salivary gland11 ± 20 of 4 2.68None
Crop2 ± 00 of 4 0.60None
Midgut4 ± 10 of 4 1.10None
Tubule4 ± 00 of 4 1.00None
Hindgut6 ± 11 of 4 1.60None
Heart2 ± 00 of 4 0.70None
Fat body6 ± 22 of 4 1.49None
Ovary3 ± 01 of 4 0.90None
Testis1 ± 00 of 4 0.30Down
Male accessory glands9 ± 22 of 4 2.20None
Virgin spermatheca8 ± 02 of 4 2.08Up
Mated spermatheca11 ± 12 of 4 2.75Up
Adult carcass7 ± 30 of 4 1.70None
Larval CNS3 ± 12 of 4 0.81None
Larval Salivary gland4 ± 00 of 4 1.13None
Larval midgut1 ± 00 of 4 0.41Down
Larval tubule4 ± 00 of 4 1.10None
Larval hindgut4 ± 01 of 4 1.02None
Larval fat body8 ± 31 of 4 2.00None
Larval trachea10 ± 34 of 4 2.37Up
Larval carcass1 ± 00 of 4 0.29Down
S2 cells (growing)3 ± 11 of 4 0.84None
Whole fly4 ± 00 of 4


Antennapedia (Antp):

Annotation Number : GM05003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260642
Gbrowse : chr3R:2824089-2824926 (-) // 99.29 //
Probeset : 1640208_s_at
Accessions : protein= NP_996166; /// NP_996167; /// NP_996168; /// NP_996169; /// NP_996170; /// NP_996171; /// NP_996172; /// NP_996173; /// NP_996174; /// NP_996175; /// NP_996176;, nucleotide= NM_206444; /// NM_206445; /// NM_206446; /// NM_206447; /// NM_206448; /// NM_206449; /// NM_206450; /// NM_206451; /// NM_206452; /// NM_206453; /// NM_206454;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : antennal segment // inferred from mutant phenotype /// 0007384 // specification of segmental identity
FlyMine data for FBgn0260642.
TRiP has 1 RNAi stocks for FBgn0260642 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 02 of 4 0.20Down
Head9 ± 13 of 4 0.70None
Eye6 ± 02 of 4 0.41Down
Thoracicoabdominal ganglion359 ± 454 of 424.00Up
Salivary gland18 ± 31 of 4 1.25None
Crop21 ± 24 of 4 1.40None
Midgut26 ± 14 of 4 1.80Up
Tubule32 ± 34 of 4 2.20Up
Hindgut62 ± 24 of 4 4.20Up
Heart43 ± 34 of 4 2.89Up
Fat body42 ± 54 of 4 2.82Up
Ovary6 ± 11 of 4 0.40Down
Testis6 ± 12 of 4 0.40Down
Male accessory glands18 ± 14 of 4 1.20None
Virgin spermatheca27 ± 24 of 4 1.81Up
Mated spermatheca34 ± 34 of 4 2.29Up
Adult carcass39 ± 114 of 4 2.60None
Larval CNS109 ± 174 of 4 7.27Up
Larval Salivary gland9 ± 13 of 4 0.66None
Larval midgut19 ± 34 of 4 1.32None
Larval tubule7 ± 03 of 4 0.50Down
Larval hindgut14 ± 04 of 4 0.95None
Larval fat body10 ± 21 of 4 0.70None
Larval trachea450 ± 804 of 430.06Up
Larval carcass13 ± 14 of 4 0.90None
S2 cells (growing)3 ± 12 of 4 0.26Down
Whole fly15 ± 14 of 4

Looking for FBgn0260642. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime