FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260648 through 18771 annotations produced 1 hits

Rrp40 (Rrp40):

Annotation Number : CG31938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260648
Gbrowse : chr2L:1728734-1729527 (+) // 100.0 //
Probeset : 1637923_at
Accessions : protein= NP_722725;, nucleotide= NM_164435;
Pathway : 0000176 // nuclear exosome (RNase complex) // inferred from physical interaction /// 0000176 // nuclear exosome (RNase c
Interpro : 0000175 // 3'-5'-exoribonuclease activity // inferred from sequence or structural similarity /// 0003723 // RNA binding
FlyMine data for FBgn0260648.
VDRC has 1 RNAi stocks for FBgn0260648 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	40 ± 1	4 of 4	0.30	Down
Head	66 ± 2	4 of 4	0.60	Down
Eye	43 ± 3	4 of 4	0.36	Down
Thoracicoabdominal ganglion	41 ± 3	4 of 4	0.30	Down
Salivary gland	67 ± 6	3 of 4	0.56	Down
Crop	80 ± 5	4 of 4	0.70	Down
Midgut	98 ± 7	4 of 4	0.80	Down
Tubule	81 ± 8	4 of 4	0.70	Down
Hindgut	67 ± 1	4 of 4	0.60	Down
Heart	69 ± 5	4 of 4	0.58	Down
Fat body	102 ± 17	4 of 4	0.85	None
Ovary	176 ± 4	4 of 4	1.50	Up
Testis	23 ± 1	4 of 4	0.20	Down
Male accessory glands	118 ± 7	4 of 4	1.00	None
Virgin spermatheca	140 ± 4	4 of 4	1.17	Up
Mated spermatheca	136 ± 1	4 of 4	1.13	Up
Adult carcass	79 ± 4	4 of 4	0.70	Down
Larval CNS	189 ± 6	4 of 4	1.58	Up
Larval Salivary gland	163 ± 5	4 of 4	1.36	Up
Larval midgut	58 ± 2	4 of 4	0.48	Down
Larval tubule	53 ± 3	4 of 4	0.40	Down
Larval hindgut	74 ± 6	4 of 4	0.62	Down
Larval fat body	60 ± 7	4 of 4	0.50	Down
Larval trachea	139 ± 21	4 of 4	1.16	None
Larval carcass	133 ± 10	4 of 4	1.11	None
S2 cells (growing)	194 ± 3	4 of 4	1.62	Up
Whole fly	120 ± 4	4 of 4

Looking for FBgn0260648. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720