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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260648 through 18771 annotations produced 1 hits



Rrp40 (Rrp40):

Annotation Number : CG31938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260648
Gbrowse : chr2L:1728734-1729527 (+) // 100.0 //
Probeset : 1637923_at
Accessions : protein= NP_722725;, nucleotide= NM_164435;
Pathway : 0000176 // nuclear exosome (RNase complex) // inferred from physical interaction /// 0000176 // nuclear exosome (RNase c
Interpro : 0000175 // 3'-5'-exoribonuclease activity // inferred from sequence or structural similarity /// 0003723 // RNA binding
FlyMine data for FBgn0260648.
VDRC has 1 RNAi stocks for FBgn0260648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 14 of 4 0.30Down
Head66 24 of 4 0.60Down
Eye43 34 of 4 0.36Down
Thoracicoabdominal ganglion41 34 of 4 0.30Down
Salivary gland67 63 of 4 0.56Down
Crop80 54 of 4 0.70Down
Midgut98 74 of 4 0.80Down
Tubule81 84 of 4 0.70Down
Hindgut67 14 of 4 0.60Down
Heart69 54 of 4 0.58Down
Fat body102 174 of 4 0.85None
Ovary176 44 of 4 1.50Up
Testis23 14 of 4 0.20Down
Male accessory glands118 74 of 4 1.00None
Virgin spermatheca140 44 of 4 1.17Up
Mated spermatheca136 14 of 4 1.13Up
Adult carcass79 44 of 4 0.70Down
Larval CNS189 64 of 4 1.58Up
Larval Salivary gland163 54 of 4 1.36Up
Larval midgut58 24 of 4 0.48Down
Larval tubule53 34 of 4 0.40Down
Larval hindgut74 64 of 4 0.62Down
Larval fat body60 74 of 4 0.50Down
Larval trachea139 214 of 4 1.16None
Larval carcass133 104 of 4 1.11None
S2 cells (growing)194 34 of 4 1.62Up
Whole fly120 44 of 4

Looking for FBgn0260648. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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