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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260653 through 18771 annotations produced 1 hits



Serpentine (serp):

Annotation Number : CG32209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260653
Gbrowse : chr3L:19694076-19701109 (-) // 100.0 //
Probeset : 1632328_at
Accessions : protein= NP_730444;, nucleotide= NM_168811;
Pathway : open tracheal system // inferred from mutant phenotype"
Interpro : 0005576 // extracellular region // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct
FlyMine data for FBgn0260653.
BioGrid reports that CG32209 interacts with Dmel CG14425 .
VDRC has 1 RNAi stocks for FBgn0260653 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head56 34 of 4 1.10None
Eye37 54 of 4 0.71Down
Thoracicoabdominal ganglion6 30 of 4 0.10Down
Salivary gland34 10 of 4 0.65Down
Crop20 20 of 4 0.40Down
Midgut35 20 of 4 0.70Down
Tubule17 00 of 4 0.30Down
Hindgut46 41 of 4 0.90None
Heart53 144 of 4 1.01None
Fat body38 161 of 4 0.74None
Ovary4 10 of 4 0.10Down
Testis32 22 of 4 0.60Down
Male accessory glands36 23 of 4 0.70Down
Virgin spermatheca16 30 of 4 0.31Down
Mated spermatheca26 41 of 4 0.51Down
Adult carcass191 104 of 4 3.60Up
Larval CNS32 54 of 4 0.61Down
Larval Salivary gland125 114 of 4 2.38Up
Larval midgut95 150 of 4 1.81None
Larval tubule21 20 of 4 0.40Down
Larval hindgut2012 724 of 438.03Up
Larval fat body12 40 of 4 0.20Down
Larval trachea2870 2354 of 454.26Up
Larval carcass3361 3054 of 463.55Up
S2 cells (growing)2 00 of 4 0.04Down
Whole fly52 34 of 4

Looking for FBgn0260653. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime