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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260655 through 18771 annotations produced 1 hits



lethal (3) 76BDm (l(3)76BDm):

Annotation Number : CG8793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260655
Gbrowse : chr3L:19606837-19611596 (-) // 100.0 //
Probeset : 1633810_at
Accessions : protein= NP_649135;, nucleotide= NM_140878;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0260655.
BioGrid reports that CG8793 interacts with CG9576 .
VDRC has 1 RNAi stocks for FBgn0260655 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 ± 34 of 4 1.40Up
Head65 ± 34 of 4 0.70Down
Eye85 ± 34 of 4 0.97None
Thoracicoabdominal ganglion127 ± 74 of 4 1.40Up
Salivary gland182 ± 94 of 4 2.06Up
Crop90 ± 24 of 4 1.00None
Midgut67 ± 44 of 4 0.80Down
Tubule36 ± 14 of 4 0.40Down
Hindgut69 ± 24 of 4 0.80Down
Heart59 ± 24 of 4 0.67Down
Fat body60 ± 44 of 4 0.68Down
Ovary94 ± 14 of 4 1.10None
Testis100 ± 34 of 4 1.10None
Male accessory glands3271 ± 324 of 437.00Up
Virgin spermatheca38 ± 24 of 4 0.44Down
Mated spermatheca36 ± 24 of 4 0.41Down
Adult carcass63 ± 44 of 4 0.70Down
Larval CNS92 ± 104 of 4 1.05None
Larval Salivary gland222 ± 64 of 4 2.52Up
Larval midgut74 ± 74 of 4 0.84None
Larval tubule85 ± 24 of 4 1.00None
Larval hindgut94 ± 84 of 4 1.07None
Larval fat body58 ± 14 of 4 0.70Down
Larval trachea93 ± 64 of 4 1.05None
Larval carcass90 ± 54 of 4 1.02None
S2 cells (growing)128 ± 34 of 4 1.45Up
Whole fly88 ± 34 of 4

Looking for FBgn0260655. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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