FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260657 through 18771 annotations produced 3 hits

CG13719 (CG42540):

Annotation Number : CG32245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260657
Gbrowse : chr3L:4574980-4590784 (+) // 100.0 //
Probeset : 1628265_a_at
Accessions : protein= NP_647917; /// NP_652337; /// NP_729016; /// NP_729018;, nucleotide= NM_139660; /// NM_144080; /// NM_144080; /// NM_168095; /// NM_168096;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
FlyMine data for FBgn0260657.
Homophila reports that CG32245 is a close match (3e-61) to human gene PDCN;NPHS2;SRN1 (NP_055440), a gene associated with Nephrotic syndrome, steroid-resistant, autosomal recessive, 600995 (3).
VDRC has 2 RNAi stocks for FBgn0260657 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	385 ± 6	4 of 4	32.60	Up
Head	67 ± 12	4 of 4	5.70	Up
Eye	3 ± 0	0 of 4	0.25	Down
Thoracicoabdominal ganglion	86 ± 14	4 of 4	7.30	Up
Salivary gland	26 ± 2	4 of 4	2.27	Up
Crop	3 ± 1	1 of 4	0.30	Down
Midgut	1 ± 1	0 of 4	0.20	Down
Tubule	2 ± 0	0 of 4	0.20	Down
Hindgut	5 ± 1	0 of 4	0.50	Down
Heart	3 ± 1	1 of 4	0.29	Down
Fat body	6 ± 2	0 of 4	0.52	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	0 of 4	0.20	Down
Male accessory glands	3 ± 1	1 of 4	0.30	Down
Virgin spermatheca	5 ± 0	0 of 4	0.49	Down
Mated spermatheca	3 ± 1	0 of 4	0.28	Down
Adult carcass	3 ± 0	0 of 4	0.30	Down
Larval CNS	46 ± 11	4 of 4	3.95	Up
Larval Salivary gland	2 ± 0	0 of 4	0.17	Down
Larval midgut	0 ± 0	0 of 4	0.03	Down
Larval tubule	2 ± 1	0 of 4	0.20	Down
Larval hindgut	1 ± 0	1 of 4	0.16	Down
Larval fat body	3 ± 1	0 of 4	0.30	Down
Larval trachea	0 ± 0	0 of 4	0.05	Down
Larval carcass	1 ± 0	0 of 4	0.13	Down
S2 cells (growing)	3 ± 0	0 of 4	0.27	Down
Whole fly	11 ± 0	4 of 4

CG13719 (CG42540):

Annotation Number : CG13719
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260657
Gbrowse : chr3L:4568689-4568968 (+) // 100.0 //
Probeset : 1623336_at
Accessions : protein= NP_647917; /// NP_652337; /// NP_729016; /// NP_729018;, nucleotide= NM_139660; /// NM_144080; /// NM_144080; /// NM_168095; /// NM_168096;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
FlyMine data for FBgn0260657.
VDRC has 2 RNAi stocks for FBgn0260657 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	0 of 4	1.60	None
Head	7 ± 2	0 of 4	1.50	None
Eye	7 ± 1	0 of 4	1.44	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.70	None
Salivary gland	10 ± 3	0 of 4	2.10	None
Crop	3 ± 1	0 of 4	0.70	None
Midgut	11 ± 2	0 of 4	2.10	None
Tubule	2 ± 0	0 of 4	0.50	Down
Hindgut	1 ± 0	0 of 4	0.30	None
Heart	6 ± 0	0 of 4	1.32	None
Fat body	10 ± 2	0 of 4	1.97	None
Ovary	1 ± 0	0 of 4	0.30	None
Testis	2 ± 0	0 of 4	0.40	None
Male accessory glands	2 ± 1	0 of 4	0.60	None
Virgin spermatheca	3 ± 1	0 of 4	0.57	None
Mated spermatheca	4 ± 2	0 of 4	0.94	None
Adult carcass	4 ± 0	0 of 4	0.80	None
Larval CNS	6 ± 1	0 of 4	1.29	None
Larval Salivary gland	15 ± 2	0 of 4	2.90	Up
Larval midgut	15 ± 1	0 of 4	2.98	Up
Larval tubule	4 ± 1	0 of 4	0.80	None
Larval hindgut	6 ± 1	0 of 4	1.31	None
Larval fat body	3 ± 0	0 of 4	0.60	None
Larval trachea	9 ± 4	0 of 4	1.78	None
Larval carcass	8 ± 3	0 of 4	1.58	None
S2 cells (growing)	7 ± 1	0 of 4	1.51	None
Whole fly	5 ± 1	0 of 4

CG13719 (CG42540):

Annotation Number : CG32245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260657
Gbrowse : chr3L:4556086-4592295 (+) // 99.84 //
Probeset : 1626837_a_at
Accessions : protein= NP_647917; /// NP_652337; /// NP_729016; /// NP_729018;, nucleotide= NM_139660; /// NM_144080; /// NM_144080; /// NM_168095; /// NM_168096;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
FlyMine data for FBgn0260657.
Homophila reports that CG32245 is a close match (3e-61) to human gene PDCN;NPHS2;SRN1 (NP_055440), a gene associated with Nephrotic syndrome, steroid-resistant, autosomal recessive, 600995 (3).
VDRC has 2 RNAi stocks for FBgn0260657 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2221 ± 62	4 of 4	33.60	Up
Head	530 ± 41	4 of 4	8.00	Up
Eye	110 ± 4	4 of 4	1.67	Up
Thoracicoabdominal ganglion	1073 ± 33	4 of 4	16.20	Up
Salivary gland	62 ± 4	4 of 4	0.94	None
Crop	2 ± 0	0 of 4	0.00	Down
Midgut	1 ± 1	0 of 4	0.00	Down
Tubule	1 ± 0	0 of 4	0.00	Down
Hindgut	3 ± 1	1 of 4	0.10	Down
Heart	5 ± 1	0 of 4	0.09	Down
Fat body	10 ± 1	4 of 4	0.16	Down
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	0 of 4	0.00	Down
Male accessory glands	3 ± 0	0 of 4	0.10	Down
Virgin spermatheca	5 ± 1	0 of 4	0.08	Down
Mated spermatheca	5 ± 1	0 of 4	0.08	Down
Adult carcass	20 ± 4	3 of 4	0.30	Down
Larval CNS	485 ± 42	4 of 4	7.34	Up
Larval Salivary gland	3 ± 0	0 of 4	0.06	Down
Larval midgut	4 ± 1	0 of 4	0.06	Down
Larval tubule	2 ± 0	0 of 4	0.00	Down
Larval hindgut	4 ± 1	0 of 4	0.07	Down
Larval fat body	2 ± 1	0 of 4	0.00	Down
Larval trachea	2 ± 2	0 of 4	0.04	Down
Larval carcass	3 ± 0	0 of 4	0.06	Down
S2 cells (growing)	5 ± 1	1 of 4	0.08	Down
Whole fly	66 ± 6	4 of 4

Looking for FBgn0260657. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720