FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260658 through 18771 annotations produced 3 hits

CG15240 (CG42541):

Annotation Number : CG15240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260658
Gbrowse : chrX:3803988-3805808 (-) // 100.0 //
Probeset : 1633692_at
Accessions : protein= NP_001033829; /// NP_996345;, nucleotide= NM_001038740; /// NM_206622;
Pathway : engulfment // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation
Interpro : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0260658.
VDRC has 6 RNAi stocks for FBgn0260658 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	20 ± 1	3 of 4	5.30	Up
Head	5 ± 1	0 of 4	1.50	None
Eye	2 ± 1	0 of 4	0.68	None
Thoracicoabdominal ganglion	9 ± 1	0 of 4	2.50	Up
Salivary gland	21 ± 4	0 of 4	5.46	Up
Crop	14 ± 4	0 of 4	3.70	None
Midgut	1 ± 0	0 of 4	0.30	None
Tubule	12 ± 1	0 of 4	3.30	Up
Hindgut	8 ± 2	0 of 4	2.10	None
Heart	3 ± 1	0 of 4	0.83	None
Fat body	4 ± 3	0 of 4	1.06	None
Ovary	2 ± 0	0 of 4	0.60	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	5 ± 2	0 of 4	1.30	None
Virgin spermatheca	3 ± 1	0 of 4	0.89	None
Mated spermatheca	5 ± 1	0 of 4	1.36	None
Adult carcass	8 ± 3	0 of 4	2.30	None
Larval CNS	6 ± 2	0 of 4	1.54	None
Larval Salivary gland	1 ± 0	0 of 4	0.33	None
Larval midgut	3 ± 1	0 of 4	0.78	None
Larval tubule	5 ± 1	0 of 4	1.40	None
Larval hindgut	5 ± 1	0 of 4	1.28	None
Larval fat body	7 ± 2	0 of 4	1.90	None
Larval trachea	1 ± 1	0 of 4	0.50	None
Larval carcass	2 ± 1	0 of 4	0.71	None
S2 cells (growing)	3 ± 1	0 of 4	0.95	None
Whole fly	3 ± 1	0 of 4

CG15240 (CG42541):

Annotation Number : CT37399
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260658
Gbrowse : chrX:3798040-3801197 (-) // 100.0 //
Probeset : 1626015_s_at
Accessions : protein= NP_001033829; /// NP_996345;, nucleotide= NM_001038740; /// NM_206622;
Pathway : engulfment // inferred from mutant phenotype /// 0007165 // signal transduction // inferred from electronic annotation
Interpro : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0260658.
VDRC has 6 RNAi stocks for FBgn0260658 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	25 ± 2	4 of 4	10.70	Up
Head	8 ± 0	2 of 4	3.70	Up
Eye	4 ± 1	0 of 4	1.69	None
Thoracicoabdominal ganglion	8 ± 2	0 of 4	3.40	None
Salivary gland	12 ± 4	0 of 4	5.34	None
Crop	3 ± 1	0 of 4	1.40	None
Midgut	6 ± 1	0 of 4	2.90	None
Tubule	4 ± 0	0 of 4	1.90	Up
Hindgut	3 ± 1	0 of 4	1.70	None
Heart	4 ± 1	1 of 4	1.85	None
Fat body	5 ± 1	0 of 4	2.14	None
Ovary	3 ± 0	0 of 4	1.30	None
Testis	4 ± 0	0 of 4	1.90	None
Male accessory glands	7 ± 1	0 of 4	3.30	Up
Virgin spermatheca	5 ± 0	0 of 4	2.09	None
Mated spermatheca	4 ± 0	0 of 4	1.71	None
Adult carcass	6 ± 1	0 of 4	2.60	None
Larval CNS	1 ± 0	0 of 4	0.74	None
Larval Salivary gland	7 ± 1	0 of 4	3.20	Up
Larval midgut	5 ± 1	0 of 4	2.13	None
Larval tubule	4 ± 1	0 of 4	1.80	None
Larval hindgut	3 ± 1	0 of 4	1.54	None
Larval fat body	8 ± 2	0 of 4	3.60	None
Larval trachea	4 ± 2	0 of 4	1.92	None
Larval carcass	1 ± 0	0 of 4	0.68	None
S2 cells (growing)	2 ± 0	0 of 4	1.07	None
Whole fly	2 ± 1	0 of 4

March 2006 (FlyBase/BDGP 5.3) (chrX:3789059-3800468 (-) // 100.0 //):

Annotation Number : CG32776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1633281_at
Accessions : protein= , nucleotide=
Interpro : "0006911 // phagocytosis
Homophila reports that CG32776 is a close match (7e-11) to human gene RRAS2;TC21 (NP_036382), a gene associated with Ovarian carcinoma (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	493 ± 10	4 of 4	51.10	Up
Head	49 ± 5	4 of 4	5.20	Up
Eye	40 ± 4	4 of 4	4.18	Up
Thoracicoabdominal ganglion	124 ± 6	4 of 4	12.90	Up
Salivary gland	7 ± 2	0 of 4	0.80	None
Crop	7 ± 0	2 of 4	0.80	None
Midgut	3 ± 0	0 of 4	0.40	Down
Tubule	4 ± 0	0 of 4	0.50	Down
Hindgut	5 ± 0	1 of 4	0.50	Down
Heart	4 ± 0	0 of 4	0.44	Down
Fat body	7 ± 3	2 of 4	0.80	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	2 ± 1	0 of 4	0.20	Down
Male accessory glands	9 ± 1	1 of 4	0.90	None
Virgin spermatheca	15 ± 1	4 of 4	1.59	Up
Mated spermatheca	22 ± 6	4 of 4	2.28	None
Adult carcass	8 ± 0	0 of 4	0.90	None
Larval CNS	43 ± 8	4 of 4	4.53	Up
Larval Salivary gland	4 ± 1	0 of 4	0.45	Down
Larval midgut	6 ± 0	0 of 4	0.64	Down
Larval tubule	1 ± 0	0 of 4	0.20	Down
Larval hindgut	3 ± 1	0 of 4	0.39	Down
Larval fat body	2 ± 0	0 of 4	0.20	Down
Larval trachea	3 ± 1	0 of 4	0.36	Down
Larval carcass	3 ± 0	0 of 4	0.38	Down
S2 cells (growing)	4 ± 0	2 of 4	0.42	Down
Whole fly	9 ± 0	4 of 4

Looking for FBgn0260658. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720