FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260659 through 18771 annotations produced 2 hits

CG31303 (CG42542):

Annotation Number : CG4196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260659
Gbrowse : chr3R:11024586-11028699 (+) // 98.41 //
Probeset : 1639635_s_at
Accessions : protein= NP_001163614; /// NP_001163615; /// NP_001163616; /// NP_650426; /// NP_731978; /// NP_731979;, nucleotide= NM_001170143; /// NM_001170144; /// NM_001170145; /// NM_142169; /// NM_142169; /// NM_169620; /// NM_169620; /// NM_170649; /// NM_170649;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0260659.
TRiP has 1 RNAi stocks for FBgn0260659 available for purchase.
VDRC has 4 RNAi stocks for FBgn0260659 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	421 ± 10	4 of 4	1.20	Up
Head	481 ± 19	4 of 4	1.30	Up
Eye	749 ± 4	4 of 4	2.07	Up
Thoracicoabdominal ganglion	490 ± 12	4 of 4	1.40	Up
Salivary gland	1789 ± 49	4 of 4	4.95	Up
Crop	398 ± 3	4 of 4	1.10	Up
Midgut	609 ± 17	4 of 4	1.70	Up
Tubule	1326 ± 192	4 of 4	3.70	Up
Hindgut	451 ± 15	4 of 4	1.20	Up
Heart	477 ± 16	4 of 4	1.32	Up
Fat body	352 ± 33	4 of 4	0.98	None
Ovary	500 ± 12	4 of 4	1.40	Up
Testis	54 ± 5	4 of 4	0.20	Down
Male accessory glands	694 ± 13	4 of 4	1.90	Up
Virgin spermatheca	412 ± 9	4 of 4	1.14	Up
Mated spermatheca	416 ± 16	4 of 4	1.15	Up
Adult carcass	400 ± 7	4 of 4	1.10	Up
Larval CNS	247 ± 6	4 of 4	0.68	Down
Larval Salivary gland	1336 ± 71	4 of 4	3.69	Up
Larval midgut	638 ± 28	4 of 4	1.76	Up
Larval tubule	1428 ± 35	4 of 4	3.90	Up
Larval hindgut	360 ± 12	4 of 4	1.00	None
Larval fat body	251 ± 29	4 of 4	0.70	Down
Larval trachea	244 ± 28	4 of 4	0.68	Down
Larval carcass	442 ± 45	4 of 4	1.22	None
S2 cells (growing)	272 ± 9	4 of 4	0.75	Down
Whole fly	361 ± 9	4 of 4

CG31303 (CG42542):

Annotation Number : CG31303
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260659
Gbrowse : chr3R:11026285-11026959 (+) // 100.0 //
Probeset : 1626296_at
Accessions : protein= NP_001163614; /// NP_001163615; /// NP_001163616; /// NP_650426; /// NP_731978; /// NP_731979;, nucleotide= NM_001170143; /// NM_001170144; /// NM_001170145; /// NM_142169; /// NM_142169; /// NM_169620; /// NM_169620; /// NM_170649; /// NM_170649;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0260659.
TRiP has 1 RNAi stocks for FBgn0260659 available for purchase.
VDRC has 4 RNAi stocks for FBgn0260659 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	30 ± 2	4 of 4	1.80	Up
Head	20 ± 2	4 of 4	1.20	None
Eye	25 ± 0	4 of 4	1.45	Up
Thoracicoabdominal ganglion	27 ± 3	4 of 4	1.60	None
Salivary gland	35 ± 5	4 of 4	2.03	Up
Crop	36 ± 5	4 of 4	2.10	Up
Midgut	32 ± 1	4 of 4	1.90	Up
Tubule	70 ± 7	4 of 4	4.00	Up
Hindgut	30 ± 0	4 of 4	1.70	Up
Heart	15 ± 0	4 of 4	0.92	None
Fat body	11 ± 3	1 of 4	0.64	Down
Ovary	3 ± 0	0 of 4	0.20	Down
Testis	5 ± 2	0 of 4	0.30	Down
Male accessory glands	17 ± 3	3 of 4	1.00	None
Virgin spermatheca	5 ± 0	0 of 4	0.32	Down
Mated spermatheca	5 ± 1	0 of 4	0.34	Down
Adult carcass	20 ± 2	2 of 4	1.20	None
Larval CNS	14 ± 1	4 of 4	0.80	None
Larval Salivary gland	24 ± 3	4 of 4	1.38	None
Larval midgut	33 ± 3	4 of 4	1.95	Up
Larval tubule	214 ± 4	4 of 4	12.30	Up
Larval hindgut	15 ± 1	4 of 4	0.91	None
Larval fat body	11 ± 1	0 of 4	0.60	Down
Larval trachea	11 ± 4	2 of 4	0.67	None
Larval carcass	26 ± 2	4 of 4	1.53	Up
S2 cells (growing)	19 ± 2	1 of 4	1.10	None
Whole fly	17 ± 1	4 of 4

Looking for FBgn0260659. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720