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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260660 through 18771 annotations produced 2 hits



CG33171 (mp):

Annotation Number : CG33171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260660
Gbrowse : chr3L:7007224-7045673 (+) // 100.0 //
Probeset : 1632932_a_at
Accessions : protein= NP_001163356; /// NP_001163357; /// NP_001163358; /// NP_001163359; /// NP_001163360; /// NP_001163361; /// NP_001163362; /// NP_001163363; /// NP_001163364; /// NP_788471; /// NP_788472;, nucleotide= NM_001169885; /// NM_001169886; /// NM_001169887; /// NM_001169888; /// NM_001169889; /// NM_001169890; /// NM_001169891; /// NM_001169892; /// NM_001169893; /// NM_176293; /// NM_176294;
Pathway : 0005581 // collagen // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // inferred f
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from e
FlyMine data for FBgn0260660.
Homophila reports that CG33171 is a close match (8e-11) to human gene COL9A1;EDM6 (NP_001842), a gene associated with Epiphyseal dysplasia, multiple, 6 (3).
TRiP has 1 RNAi stocks for FBgn0260660 available for purchase.
VDRC has 5 RNAi stocks for FBgn0260660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1102 ± 334 of 422.90Up
Head144 ± 104 of 4 3.00Up
Eye78 ± 104 of 4 1.62None
Thoracicoabdominal ganglion720 ± 124 of 415.00Up
Salivary gland30 ± 33 of 4 0.63Down
Crop15 ± 14 of 4 0.30Down
Midgut7 ± 00 of 4 0.20Down
Tubule13 ± 11 of 4 0.30Down
Hindgut20 ± 24 of 4 0.40Down
Heart448 ± 694 of 4 9.32Up
Fat body44 ± 34 of 4 0.93None
Ovary37 ± 24 of 4 0.80Down
Testis140 ± 34 of 4 2.90Up
Male accessory glands8 ± 21 of 4 0.20Down
Virgin spermatheca43 ± 34 of 4 0.89None
Mated spermatheca66 ± 174 of 4 1.38None
Adult carcass82 ± 44 of 4 1.70Up
Larval CNS397 ± 424 of 4 8.26Up
Larval Salivary gland33 ± 13 of 4 0.70Down
Larval midgut40 ± 64 of 4 0.85None
Larval tubule9 ± 12 of 4 0.20Down
Larval hindgut209 ± 264 of 4 4.34Up
Larval fat body60 ± 114 of 4 1.30None
Larval trachea230 ± 204 of 4 4.78Up
Larval carcass430 ± 644 of 4 8.93Up
S2 cells (growing)8 ± 11 of 4 0.18Down
Whole fly48 ± 14 of 4



CG33171 (mp):

Annotation Number : CG8647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260660
Gbrowse : chr3L:7005325-7006440 (+) // 100.0 //
Probeset : 1633653_at
Accessions : protein= NP_001163356; /// NP_001163357; /// NP_001163358; /// NP_001163359; /// NP_001163360; /// NP_001163361; /// NP_001163362; /// NP_001163363; /// NP_001163364; /// NP_788471; /// NP_788472;, nucleotide= NM_001169885; /// NM_001169886; /// NM_001169887; /// NM_001169888; /// NM_001169889; /// NM_001169890; /// NM_001169891; /// NM_001169892; /// NM_001169893; /// NM_176293; /// NM_176294;
Pathway : 0005581 // collagen // inferred from sequence or structural similarity /// 0031012 // extracellular matrix // inferred f
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from e
FlyMine data for FBgn0260660.
TRiP has 1 RNAi stocks for FBgn0260660 available for purchase.
VDRC has 5 RNAi stocks for FBgn0260660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.80None
Head6 ± 10 of 4 1.00None
Eye3 ± 10 of 4 0.48None
Thoracicoabdominal ganglion6 ± 10 of 4 1.00None
Salivary gland12 ± 40 of 4 1.99None
Crop5 ± 00 of 4 0.90None
Midgut12 ± 00 of 4 2.00Up
Tubule5 ± 00 of 4 0.80None
Hindgut7 ± 10 of 4 1.20None
Heart10 ± 20 of 4 1.73None
Fat body4 ± 20 of 4 0.68None
Ovary5 ± 10 of 4 0.80None
Testis6 ± 00 of 4 1.00None
Male accessory glands7 ± 10 of 4 1.20None
Virgin spermatheca5 ± 20 of 4 0.93None
Mated spermatheca5 ± 10 of 4 0.84None
Adult carcass9 ± 20 of 4 1.50None
Larval CNS6 ± 20 of 4 1.09None
Larval Salivary gland4 ± 00 of 4 0.75None
Larval midgut11 ± 00 of 4 1.75None
Larval tubule8 ± 00 of 4 1.30None
Larval hindgut13 ± 10 of 4 2.08Up
Larval fat body17 ± 12 of 4 2.80Up
Larval trachea6 ± 10 of 4 1.04None
Larval carcass13 ± 20 of 4 2.12Up
S2 cells (growing)6 ± 20 of 4 1.10None
Whole fly6 ± 10 of 4

Looking for FBgn0260660. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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