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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260713 through 18771 annotations produced 1 hits



(CG42544):

Annotation Number : HDC12266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260713
Gbrowse : chr3R:3129974-3130674 (+) // 95.51 //
Probeset : 1626036_at
Accessions : protein= NP_001163539;, nucleotide= NM_001170068;
FlyMine data for FBgn0260713.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.80None
Head4 ± 10 of 4 0.70None
Eye5 ± 00 of 4 0.91None
Thoracicoabdominal ganglion3 ± 10 of 4 0.60None
Salivary gland7 ± 40 of 4 1.20None
Crop7 ± 00 of 4 1.20None
Midgut7 ± 10 of 4 1.30None
Tubule5 ± 00 of 4 0.80None
Hindgut4 ± 10 of 4 0.70None
Heart5 ± 20 of 4 0.83None
Fat body9 ± 11 of 4 1.59None
Ovary5 ± 10 of 4 0.80None
Testis2 ± 00 of 4 0.40None
Male accessory glands10 ± 00 of 4 1.80None
Virgin spermatheca11 ± 00 of 4 1.80None
Mated spermatheca11 ± 10 of 4 1.81None
Adult carcass9 ± 10 of 4 1.60None
Larval CNS2 ± 10 of 4 0.44None
Larval Salivary gland6 ± 30 of 4 1.10None
Larval midgut9 ± 10 of 4 1.62None
Larval tubule4 ± 10 of 4 0.80None
Larval hindgut3 ± 10 of 4 0.62None
Larval fat body6 ± 10 of 4 1.00None
Larval trachea2 ± 10 of 4 0.38None
Larval carcass4 ± 10 of 4 0.81None
S2 cells (growing)5 ± 10 of 4 0.84None
Whole fly6 ± 20 of 4

Looking for FBgn0260713. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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