FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260741 through 18771 annotations produced 1 hits

anon-87Aa (CG3281):

Annotation Number : CG3281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260741
Gbrowse : chr3R:7786604-7788523 (-) // 100.0 //
Probeset : 1625137_at
Accessions : protein= NP_650132;, nucleotide= NM_141875;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0260741.
Homophila reports that CG3281 is a close match (7e-11) to human gene BCL11A;CTIP1;EVI9;HBFQTL5;KIAA1809 (NP_075044), a gene associated with Fetal hemoglobin quantitative trait locus 5, 142335 (3).
BioGrid reports that CG3281 interacts with CG8159 CG7386 .
VDRC has 1 RNAi stocks for FBgn0260741 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	90 ± 5	4 of 4	1.00	None
Head	59 ± 2	4 of 4	0.60	Down
Eye	60 ± 3	4 of 4	0.64	Down
Thoracicoabdominal ganglion	71 ± 3	4 of 4	0.80	Down
Salivary gland	66 ± 7	4 of 4	0.71	Down
Crop	46 ± 2	4 of 4	0.50	Down
Midgut	35 ± 0	4 of 4	0.40	Down
Tubule	42 ± 1	4 of 4	0.40	Down
Hindgut	48 ± 1	4 of 4	0.50	Down
Heart	41 ± 1	4 of 4	0.44	Down
Fat body	41 ± 8	4 of 4	0.43	Down
Ovary	177 ± 4	4 of 4	1.90	Up
Testis	68 ± 3	4 of 4	0.70	Down
Male accessory glands	58 ± 4	4 of 4	0.60	Down
Virgin spermatheca	41 ± 3	4 of 4	0.43	Down
Mated spermatheca	39 ± 1	4 of 4	0.42	Down
Adult carcass	43 ± 3	4 of 4	0.50	Down
Larval CNS	76 ± 3	4 of 4	0.81	Down
Larval Salivary gland	60 ± 5	4 of 4	0.64	Down
Larval midgut	38 ± 2	4 of 4	0.40	Down
Larval tubule	42 ± 1	4 of 4	0.50	Down
Larval hindgut	53 ± 2	4 of 4	0.57	Down
Larval fat body	61 ± 4	4 of 4	0.70	Down
Larval trachea	62 ± 5	4 of 4	0.66	Down
Larval carcass	57 ± 4	4 of 4	0.60	Down
S2 cells (growing)	56 ± 2	4 of 4	0.60	Down
Whole fly	94 ± 2	4 of 4

Looking for FBgn0260741. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720