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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260742 through 18771 annotations produced 1 hits



anon-87Ab (CG12213):

Annotation Number : CG12213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260742
Gbrowse : chr3R:7791220-7793413 (-) // 100.0 //
Probeset : 1635454_a_at
Accessions : protein= NP_001097754; /// NP_650133; /// NP_731654;, nucleotide= NM_001104284; /// NM_141876; /// NM_169442;
FlyMine data for FBgn0260742.
VDRC has 2 RNAi stocks for FBgn0260742 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 64 of 4 2.60Up
Head49 24 of 4 1.00None
Eye19 14 of 4 0.42Down
Thoracicoabdominal ganglion100 44 of 4 2.10Up
Salivary gland6 10 of 4 0.13Down
Crop33 31 of 4 0.70Down
Midgut26 30 of 4 0.60Down
Tubule6 00 of 4 0.10Down
Hindgut29 20 of 4 0.60Down
Heart28 34 of 4 0.60Down
Fat body45 84 of 4 0.96None
Ovary58 14 of 4 1.20Up
Testis40 34 of 4 0.90None
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca4 10 of 4 0.09Down
Mated spermatheca6 10 of 4 0.13Down
Adult carcass32 40 of 4 0.70Down
Larval CNS51 104 of 4 1.10None
Larval Salivary gland12 50 of 4 0.26Down
Larval midgut23 31 of 4 0.49Down
Larval tubule49 43 of 4 1.10None
Larval hindgut32 10 of 4 0.69Down
Larval fat body48 61 of 4 1.00None
Larval trachea32 14 of 4 0.69Down
Larval carcass23 30 of 4 0.49Down
S2 cells (growing)202 24 of 4 4.30Up
Whole fly47 14 of 4

Looking for FBgn0260742. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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