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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260743 through 18771 annotations produced 1 hits



anon-87Ac (CG18347):

Annotation Number : CG18347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260743
Gbrowse : chr3R:7793450-7797200 (+) // 100.0 //
Probeset : 1638457_at
Accessions : protein= NP_650134;, nucleotide= NM_141877;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0260743.
Homophila reports that CG18347 is a close match (2e-11) to human gene BMIQ4;UCP2 (NP_003346), a gene associated with {Obesity, susceptibility to, BMIQ4} (3).
BioGrid reports that CG18347 interacts with CG6378 .
TRiP has 1 RNAi stocks for FBgn0260743 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260743 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain460 ± 64 of 4 1.90Up
Head199 ± 84 of 4 0.80Down
Eye153 ± 84 of 4 0.64Down
Thoracicoabdominal ganglion500 ± 64 of 4 2.10Up
Salivary gland383 ± 154 of 4 1.61Up
Crop176 ± 74 of 4 0.70Down
Midgut390 ± 134 of 4 1.60Up
Tubule47 ± 54 of 4 0.20Down
Hindgut701 ± 204 of 4 2.90Up
Heart85 ± 44 of 4 0.36Down
Fat body91 ± 74 of 4 0.38Down
Ovary540 ± 224 of 4 2.30Up
Testis42 ± 34 of 4 0.20Down
Male accessory glands28 ± 34 of 4 0.10Down
Virgin spermatheca58 ± 24 of 4 0.24Down
Mated spermatheca38 ± 24 of 4 0.16Down
Adult carcass91 ± 54 of 4 0.40Down
Larval CNS249 ± 354 of 4 1.04None
Larval Salivary gland166 ± 104 of 4 0.70Down
Larval midgut316 ± 124 of 4 1.33Up
Larval tubule76 ± 44 of 4 0.30Down
Larval hindgut945 ± 524 of 4 3.96Up
Larval fat body1033 ± 944 of 4 4.30Up
Larval trachea129 ± 64 of 4 0.54Down
Larval carcass414 ± 334 of 4 1.74Up
S2 cells (growing)69 ± 24 of 4 0.29Down
Whole fly238 ± 44 of 4

Looking for FBgn0260743. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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