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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260744 through 18771 annotations produced 1 hits



Transport and Golgi organization 9 (Tango9):

Annotation Number : CG10007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260744
Gbrowse : chr3R:7798807-7800587 (-) // 100.0 //
Probeset : 1632259_at
Accessions : protein= NP_650136;, nucleotide= NM_141879;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct
Interpro : 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation
FlyMine data for FBgn0260744.
BioGrid reports that CG10007 interacts with CG11205 CG17686 CG32491 .
TRiP has 1 RNAi stocks for FBgn0260744 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain403 24 of 4 1.60Up
Head529 164 of 4 2.20Up
Eye1381 454 of 4 5.63Up
Thoracicoabdominal ganglion433 124 of 4 1.80Up
Salivary gland363 204 of 4 1.48Up
Crop702 124 of 4 2.90Up
Midgut427 44 of 4 1.70Up
Tubule735 494 of 4 3.00Up
Hindgut1313 404 of 4 5.40Up
Heart596 454 of 4 2.43Up
Fat body622 444 of 4 2.54Up
Ovary250 64 of 4 1.00None
Testis90 24 of 4 0.40Down
Male accessory glands423 114 of 4 1.70Up
Virgin spermatheca677 54 of 4 2.76Up
Mated spermatheca492 394 of 4 2.01Up
Adult carcass504 254 of 4 2.10Up
Larval CNS167 144 of 4 0.68Down
Larval Salivary gland340 184 of 4 1.39Up
Larval midgut371 384 of 4 1.51Up
Larval tubule1783 444 of 4 7.30Up
Larval hindgut450 334 of 4 1.83Up
Larval fat body2755 3234 of 411.20Up
Larval trachea346 344 of 4 1.41Up
Larval carcass283 494 of 4 1.16None
S2 cells (growing)164 44 of 4 0.67Down
Whole fly245 184 of 4

Looking for FBgn0260744. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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