FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260744 through 18771 annotations produced 1 hits

Transport and Golgi organization 9 (Tango9):

Annotation Number : CG10007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260744
Gbrowse : chr3R:7798807-7800587 (-) // 100.0 //
Probeset : 1632259_at
Accessions : protein= NP_650136;, nucleotide= NM_141879;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct
Interpro : 0005351 // sugar:hydrogen symporter activity // inferred from electronic annotation
FlyMine data for FBgn0260744.
BioGrid reports that CG10007 interacts with CG11205 CG17686 CG32491 .
TRiP has 1 RNAi stocks for FBgn0260744 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	403 ± 2	4 of 4	1.60	Up
Head	529 ± 16	4 of 4	2.20	Up
Eye	1381 ± 45	4 of 4	5.63	Up
Thoracicoabdominal ganglion	433 ± 12	4 of 4	1.80	Up
Salivary gland	363 ± 20	4 of 4	1.48	Up
Crop	702 ± 12	4 of 4	2.90	Up
Midgut	427 ± 4	4 of 4	1.70	Up
Tubule	735 ± 49	4 of 4	3.00	Up
Hindgut	1313 ± 40	4 of 4	5.40	Up
Heart	596 ± 45	4 of 4	2.43	Up
Fat body	622 ± 44	4 of 4	2.54	Up
Ovary	250 ± 6	4 of 4	1.00	None
Testis	90 ± 2	4 of 4	0.40	Down
Male accessory glands	423 ± 11	4 of 4	1.70	Up
Virgin spermatheca	677 ± 5	4 of 4	2.76	Up
Mated spermatheca	492 ± 39	4 of 4	2.01	Up
Adult carcass	504 ± 25	4 of 4	2.10	Up
Larval CNS	167 ± 14	4 of 4	0.68	Down
Larval Salivary gland	340 ± 18	4 of 4	1.39	Up
Larval midgut	371 ± 38	4 of 4	1.51	Up
Larval tubule	1783 ± 44	4 of 4	7.30	Up
Larval hindgut	450 ± 33	4 of 4	1.83	Up
Larval fat body	2755 ± 323	4 of 4	11.20	Up
Larval trachea	346 ± 34	4 of 4	1.41	Up
Larval carcass	283 ± 49	4 of 4	1.16	None
S2 cells (growing)	164 ± 4	4 of 4	0.67	Down
Whole fly	245 ± 18	4 of 4

Looking for FBgn0260744. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720