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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260746 through 18771 annotations produced 1 hits



beta-galactosidase (Ect3):

Annotation Number : CG3132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260746
Gbrowse : chr3R:7825028-7829238 (+) // 100.0 //
Probeset : 1624517_at
Accessions : protein= NP_650142;, nucleotide= NM_141885;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0260746.
Homophila reports that CG3132 is a close match (3e-138) to human gene GLB1 (NP_001073279), a gene associated with GM1-gangliosidosis, type I, 230500 (3);GM1-gangliosidosis, type II, 230600 (3);GM1-gangliosidosis, type III, 230650 (3);Morquio syndrome B, 253010 (3).
BioGrid reports that CG3132 interacts with CG7238 .
TRiP has 1 RNAi stocks for FBgn0260746 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260746 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 54 of 4 1.10None
Head127 194 of 4 3.90Up
Eye323 294 of 4 9.80Up
Thoracicoabdominal ganglion43 43 of 4 1.30None
Salivary gland18 81 of 4 0.57None
Crop7 10 of 4 0.20Down
Midgut46 74 of 4 1.40None
Tubule10 10 of 4 0.30Down
Hindgut4 20 of 4 0.10Down
Heart6 20 of 4 0.21Down
Fat body5 30 of 4 0.16Down
Ovary48 42 of 4 1.50None
Testis41 24 of 4 1.30None
Male accessory glands7 20 of 4 0.20Down
Virgin spermatheca37 53 of 4 1.12None
Mated spermatheca40 11 of 4 1.24None
Adult carcass18 30 of 4 0.60None
Larval CNS69 94 of 4 2.10Up
Larval Salivary gland20 20 of 4 0.61None
Larval midgut4 20 of 4 0.13Down
Larval tubule5 20 of 4 0.20Down
Larval hindgut8 20 of 4 0.25Down
Larval fat body225 244 of 4 6.80Up
Larval trachea10 70 of 4 0.33Down
Larval carcass5 20 of 4 0.17Down
S2 cells (growing)928 124 of 428.10Up
Whole fly33 74 of 4

Looking for FBgn0260746. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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