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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260747 through 18771 annotations produced 1 hits



transcript f (CG5010):

Annotation Number : CG5010
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260747
Gbrowse : chrX:17043070-17044680 (+) // 100.0 //
Probeset : 1628589_at
Accessions : protein= NP_573196;, nucleotide= NM_132968;
FlyMine data for FBgn0260747.
VDRC has 1 RNAi stocks for FBgn0260747 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1187 ± 174 of 4 1.30Up
Head1507 ± 184 of 4 1.60Up
Eye1592 ± 244 of 4 1.68Up
Thoracicoabdominal ganglion1574 ± 514 of 4 1.70Up
Salivary gland1674 ± 444 of 4 1.77Up
Crop1591 ± 404 of 4 1.70Up
Midgut1001 ± 174 of 4 1.10None
Tubule312 ± 124 of 4 0.30Down
Hindgut2017 ± 944 of 4 2.10Up
Heart2064 ± 654 of 4 2.18Up
Fat body2041 ± 1114 of 4 2.16Up
Ovary922 ± 134 of 4 1.00None
Testis529 ± 204 of 4 0.60Down
Male accessory glands1875 ± 674 of 4 2.00Up
Virgin spermatheca1352 ± 824 of 4 1.43Up
Mated spermatheca1154 ± 344 of 4 1.22Up
Adult carcass2222 ± 1074 of 4 2.30Up
Larval CNS572 ± 654 of 4 0.61Down
Larval Salivary gland1044 ± 554 of 4 1.10None
Larval midgut1276 ± 794 of 4 1.35Up
Larval tubule967 ± 474 of 4 1.00None
Larval hindgut1362 ± 654 of 4 1.44Up
Larval fat body1274 ± 1244 of 4 1.30None
Larval trachea754 ± 714 of 4 0.80Down
Larval carcass776 ± 484 of 4 0.82Down
S2 cells (growing)1198 ± 494 of 4 1.27Up
Whole fly946 ± 304 of 4

Looking for FBgn0260747. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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