FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260748 through 18771 annotations produced 1 hits

transcript b (CG5004):

Annotation Number : CG5004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260748
Gbrowse : chrX:17001669-17029154 (+) // 100.0 //
Probeset : 1640154_at
Accessions : protein= NP_573195;, nucleotide= NM_132967;
FlyMine data for FBgn0260748.
VDRC has 2 RNAi stocks for FBgn0260748 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 3	4 of 4	0.60	Down
Head	15 ± 2	3 of 4	0.50	Down
Eye	17 ± 1	3 of 4	0.54	Down
Thoracicoabdominal ganglion	12 ± 0	3 of 4	0.40	Down
Salivary gland	40 ± 5	2 of 4	1.24	None
Crop	102 ± 7	4 of 4	3.10	Up
Midgut	42 ± 5	4 of 4	1.30	None
Tubule	21 ± 0	3 of 4	0.70	Down
Hindgut	58 ± 3	4 of 4	1.80	Up
Heart	22 ± 2	4 of 4	0.70	Down
Fat body	7 ± 3	1 of 4	0.23	Down
Ovary	68 ± 1	4 of 4	2.10	Up
Testis	19 ± 0	4 of 4	0.60	Down
Male accessory glands	15 ± 2	0 of 4	0.50	Down
Virgin spermatheca	1 ± 0	0 of 4	0.03	Down
Mated spermatheca	1 ± 0	0 of 4	0.03	Down
Adult carcass	10 ± 1	0 of 4	0.30	Down
Larval CNS	18 ± 1	4 of 4	0.56	Down
Larval Salivary gland	26 ± 2	4 of 4	0.80	None
Larval midgut	36 ± 1	4 of 4	1.13	None
Larval tubule	40 ± 1	4 of 4	1.30	Up
Larval hindgut	39 ± 1	4 of 4	1.22	Up
Larval fat body	17 ± 1	2 of 4	0.50	Down
Larval trachea	32 ± 3	4 of 4	1.00	None
Larval carcass	28 ± 2	4 of 4	0.88	None
S2 cells (growing)	268 ± 2	4 of 4	8.24	Up
Whole fly	32 ± 2	4 of 4

Looking for FBgn0260748. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720