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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260749 through 18771 annotations produced 1 hits



CG5640 (Utx):

Annotation Number : CG5640
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260749
Gbrowse : chr2L:10272651-10278811 (-) // 100.0 //
Probeset : 1635202_s_at
Accessions : protein= NP_609368; /// NP_723550; /// NP_723551;, nucleotide= NM_135524; /// NM_164907; /// NM_164908;
Pathway : 0005705 // polytene chromosome interband // inferred from direct assay
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0260749.
BioGrid reports that CG5640 interacts with CG7926 CG8340 CG7977 .
TRiP has 1 RNAi stocks for FBgn0260749 available for purchase.
VDRC has 3 RNAi stocks for FBgn0260749 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 94 of 4 1.60Up
Head73 34 of 4 0.70Down
Eye117 44 of 4 1.05None
Thoracicoabdominal ganglion146 114 of 4 1.30Up
Salivary gland191 64 of 4 1.71Up
Crop107 54 of 4 1.00None
Midgut75 54 of 4 0.70Down
Tubule106 54 of 4 1.00None
Hindgut80 34 of 4 0.70Down
Heart70 54 of 4 0.62Down
Fat body47 24 of 4 0.42Down
Ovary235 44 of 4 2.10Up
Testis138 64 of 4 1.20Up
Male accessory glands62 44 of 4 0.60Down
Virgin spermatheca94 54 of 4 0.84Down
Mated spermatheca97 44 of 4 0.87None
Adult carcass71 34 of 4 0.60Down
Larval CNS197 44 of 4 1.76Up
Larval Salivary gland125 154 of 4 1.12None
Larval midgut46 54 of 4 0.42Down
Larval tubule91 24 of 4 0.80Down
Larval hindgut42 14 of 4 0.38Down
Larval fat body132 44 of 4 1.20Up
Larval trachea106 74 of 4 0.95None
Larval carcass74 184 of 4 0.66None
S2 cells (growing)145 84 of 4 1.30Up
Whole fly112 44 of 4

Looking for FBgn0260749. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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