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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260753 through 18771 annotations produced 1 hits



CG13758 (pdfr):

Annotation Number : CG13758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260753
Gbrowse : chrX:2448133-2470486 (+) // 100.0 //
Probeset : 1626875_at
Accessions : protein= NP_570007;, nucleotide= NM_130651;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0260753.
Homophila reports that CG13758 is a close match (2e-24) to human gene GHRHR (NP_001009824), a gene associated with Growth hormone deficient dwarfism (3).
TRiP has 3 RNAi stocks for FBgn0260753 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260753 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 14 of 4 1.60Up
Head68 74 of 4 2.20Up
Eye75 14 of 4 2.43Up
Thoracicoabdominal ganglion12 20 of 4 0.40Down
Salivary gland4 10 of 4 0.13Down
Crop285 134 of 4 9.20Up
Midgut25 30 of 4 0.80None
Tubule12 10 of 4 0.40Down
Hindgut95 54 of 4 3.10Up
Heart57 14 of 4 1.83Up
Fat body118 363 of 4 3.80Up
Ovary8 20 of 4 0.30Down
Testis11 10 of 4 0.40Down
Male accessory glands26 30 of 4 0.80None
Virgin spermatheca58 53 of 4 1.88Up
Mated spermatheca39 11 of 4 1.26None
Adult carcass62 70 of 4 2.00Up
Larval CNS3 10 of 4 0.13Down
Larval Salivary gland2 00 of 4 0.07Down
Larval midgut12 10 of 4 0.41Down
Larval tubule23 20 of 4 0.70None
Larval hindgut135 104 of 4 4.34Up
Larval fat body27 50 of 4 0.90None
Larval trachea6 30 of 4 0.20Down
Larval carcass7 20 of 4 0.25Down
S2 cells (growing)24 20 of 4 0.80None
Whole fly31 20 of 4

Looking for FBgn0260753. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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