FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260756 through 18771 annotations produced 1 hits

(CG42554):

Annotation Number : CG13886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260756
Gbrowse : chr3L:834093-836553 (+) // 100.0 //
Probeset : 1634518_at
Accessions : protein= NP_001163314;, nucleotide= NM_001169843;
FlyMine data for FBgn0260756.
BioGrid reports that CG13886 interacts with CG8470 .
VDRC has 1 RNAi stocks for FBgn0260756 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	105 ± 3	4 of 4	1.30	Up
Head	62 ± 1	4 of 4	0.80	Down
Eye	120 ± 7	4 of 4	1.51	Up
Thoracicoabdominal ganglion	82 ± 1	4 of 4	1.00	None
Salivary gland	22 ± 2	0 of 4	0.28	Down
Crop	89 ± 3	4 of 4	1.10	None
Midgut	47 ± 2	4 of 4	0.60	Down
Tubule	46 ± 2	4 of 4	0.60	Down
Hindgut	70 ± 1	4 of 4	0.90	None
Heart	54 ± 8	4 of 4	0.69	None
Fat body	60 ± 12	4 of 4	0.76	Down
Ovary	138 ± 5	4 of 4	1.70	Up
Testis	177 ± 6	4 of 4	2.20	Up
Male accessory glands	101 ± 5	4 of 4	1.30	Up
Virgin spermatheca	30 ± 3	3 of 4	0.39	Down
Mated spermatheca	28 ± 2	4 of 4	0.36	Down
Adult carcass	62 ± 5	4 of 4	0.80	Down
Larval CNS	51 ± 1	4 of 4	0.65	Down
Larval Salivary gland	40 ± 2	4 of 4	0.50	Down
Larval midgut	27 ± 3	4 of 4	0.34	Down
Larval tubule	100 ± 5	4 of 4	1.30	Up
Larval hindgut	50 ± 5	4 of 4	0.63	Down
Larval fat body	54 ± 10	4 of 4	0.70	None
Larval trachea	33 ± 6	4 of 4	0.42	Down
Larval carcass	30 ± 6	4 of 4	0.38	Down
S2 cells (growing)	28 ± 2	4 of 4	0.35	Down
Whole fly	79 ± 3	4 of 4

Looking for FBgn0260756. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720