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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260775 through 18771 annotations produced 3 hits



/// DnaJ-like-60 (CG42568 /// DnaJ-60):

Annotation Number : CG12240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260770 /// FBgn0260775
Gbrowse : chr2R:20045837-20046819 (-) // 100.0 //
Probeset : 1636379_a_at
Accessions : protein= NP_001163284; /// NP_001163285; /// NP_523840; /// NP_611892;, nucleotide= NM_001169813; /// NM_001169814; /// NM_079116; /// NM_138048;
Pathway : 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integr
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0260770 /// FBgn0260775.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain248 ± 54 of 4 1.60Up
Head174 ± 44 of 4 1.10None
Eye296 ± 84 of 4 1.95Up
Thoracicoabdominal ganglion183 ± 54 of 4 1.20Up
Salivary gland269 ± 74 of 4 1.78Up
Crop181 ± 74 of 4 1.20None
Midgut100 ± 74 of 4 0.70Down
Tubule179 ± 124 of 4 1.20Up
Hindgut202 ± 34 of 4 1.30Up
Heart188 ± 94 of 4 1.24Up
Fat body118 ± 84 of 4 0.78Down
Ovary43 ± 04 of 4 0.30Down
Testis372 ± 74 of 4 2.50Up
Male accessory glands160 ± 74 of 4 1.10None
Virgin spermatheca156 ± 24 of 4 1.03None
Mated spermatheca142 ± 24 of 4 0.94None
Adult carcass363 ± 114 of 4 2.40Up
Larval CNS57 ± 54 of 4 0.38Down
Larval Salivary gland76 ± 24 of 4 0.50Down
Larval midgut77 ± 34 of 4 0.51Down
Larval tubule120 ± 54 of 4 0.80Down
Larval hindgut91 ± 64 of 4 0.60Down
Larval fat body97 ± 74 of 4 0.60Down
Larval trachea78 ± 264 of 4 0.52Down
Larval carcass89 ± 84 of 4 0.59Down
S2 cells (growing)48 ± 34 of 4 0.32Down
Whole fly151 ± 104 of 4



/// DnaJ-like-60 (CG42568 /// DnaJ-60):

Annotation Number : CG12240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260770 /// FBgn0260775
Gbrowse : chr2R:20045837-20046819 (-) // 100.0 //
Probeset : 1633399_at
Accessions : protein= NP_001163284; /// NP_001163285; /// NP_523840; /// NP_611892;, nucleotide= NM_001169813; /// NM_001169814; /// NM_079116; /// NM_138048;
Pathway : 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integr
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0260770 /// FBgn0260775.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain543 ± 34 of 4 1.40Up
Head437 ± 194 of 4 1.10None
Eye685 ± 254 of 4 1.76Up
Thoracicoabdominal ganglion496 ± 194 of 4 1.30None
Salivary gland759 ± 104 of 4 1.95Up
Crop539 ± 24 of 4 1.40Up
Midgut211 ± 94 of 4 0.50Down
Tubule609 ± 284 of 4 1.60Up
Hindgut481 ± 64 of 4 1.20None
Heart515 ± 164 of 4 1.32Up
Fat body280 ± 214 of 4 0.72None
Ovary104 ± 44 of 4 0.30Down
Testis949 ± 554 of 4 2.40Up
Male accessory glands367 ± 124 of 4 0.90None
Virgin spermatheca919 ± 254 of 4 2.36Up
Mated spermatheca831 ± 364 of 4 2.13Up
Adult carcass922 ± 504 of 4 2.40Up
Larval CNS138 ± 124 of 4 0.36Down
Larval Salivary gland147 ± 24 of 4 0.38Down
Larval midgut142 ± 74 of 4 0.37Down
Larval tubule356 ± 94 of 4 0.90None
Larval hindgut240 ± 184 of 4 0.62Down
Larval fat body192 ± 294 of 4 0.50Down
Larval trachea219 ± 644 of 4 0.56Down
Larval carcass253 ± 174 of 4 0.65Down
S2 cells (growing)103 ± 44 of 4 0.27Down
Whole fly389 ± 364 of 4



/// DnaJ-like-60 (CG42568 /// DnaJ-60):

Annotation Number : CG12240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260770 /// FBgn0260775
Gbrowse : chr2R:20045188-20046819 (-) // 100.0 //
Probeset : 1623119_at
Accessions : protein= NP_001163284; /// NP_001163285; /// NP_523840; /// NP_611892;, nucleotide= NM_001169813; /// NM_001169814; /// NM_079116; /// NM_138048;
Pathway : 0016020 // membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integr
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0260770 /// FBgn0260775.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 24 of 4 3.60Up
Head26 ± 32 of 4 1.30None
Eye26 ± 24 of 4 1.32None
Thoracicoabdominal ganglion46 ± 24 of 4 2.30Up
Salivary gland50 ± 63 of 4 2.47Up
Crop29 ± 21 of 4 1.40Up
Midgut11 ± 40 of 4 0.50None
Tubule26 ± 12 of 4 1.30Up
Hindgut29 ± 41 of 4 1.40None
Heart15 ± 22 of 4 0.77None
Fat body32 ± 52 of 4 1.59Up
Ovary7 ± 20 of 4 0.30Down
Testis39 ± 14 of 4 1.90Up
Male accessory glands14 ± 50 of 4 0.70None
Virgin spermatheca21 ± 42 of 4 1.07None
Mated spermatheca13 ± 30 of 4 0.65None
Adult carcass35 ± 53 of 4 1.70None
Larval CNS26 ± 73 of 4 1.31None
Larval Salivary gland21 ± 20 of 4 1.04None
Larval midgut13 ± 40 of 4 0.65None
Larval tubule10 ± 50 of 4 0.50None
Larval hindgut15 ± 20 of 4 0.74None
Larval fat body11 ± 60 of 4 0.60None
Larval trachea10 ± 51 of 4 0.50Down
Larval carcass23 ± 20 of 4 1.13None
S2 cells (growing)15 ± 10 of 4 0.74Down
Whole fly20 ± 10 of 4

Looking for FBgn0260775. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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