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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260780 through 18771 annotations produced 1 hits



wispy (wisp):

Annotation Number : CG15737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260780
Gbrowse : chrX:11787977-11793943 (+) // 100.0 //
Probeset : 1631125_at
Accessions : protein= NP_572766;, nucleotide= NM_132538;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electro
FlyMine data for FBgn0260780.
BioGrid reports that CG15737 interacts with CG2116 CG2047 CG2865 CG3379 CG4491 CG4832 CG5923 CG7010 CG7399 CG8206 CG8854 CG9036 CG9277 CG9511 .
VDRC has 2 RNAi stocks for FBgn0260780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 20 of 4 0.00Down
Head3 00 of 4 0.00Down
Eye6 10 of 4 0.01Down
Thoracicoabdominal ganglion9 20 of 4 0.00Down
Salivary gland4 00 of 4 0.01Down
Crop6 00 of 4 0.00Down
Midgut6 20 of 4 0.00Down
Tubule15 70 of 4 0.00Down
Hindgut3 00 of 4 0.00Down
Heart3 00 of 4 0.01Down
Fat body14 40 of 4 0.03Down
Ovary1059 84 of 4 2.20Up
Testis30 24 of 4 0.10Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca12 10 of 4 0.03Down
Mated spermatheca6 20 of 4 0.01Down
Adult carcass25 131 of 4 0.10Down
Larval CNS5 20 of 4 0.01Down
Larval Salivary gland4 20 of 4 0.01Down
Larval midgut6 20 of 4 0.01Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut3 00 of 4 0.01Down
Larval fat body10 40 of 4 0.00Down
Larval trachea4 10 of 4 0.01Down
Larval carcass4 20 of 4 0.01Down
S2 cells (growing)6 10 of 4 0.01Down
Whole fly487 304 of 4

Looking for FBgn0260780. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime