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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0260789 through 18771 annotations produced 1 hits

lethal(1)malignant blood neoplasm (mxc):

Annotation Number : CG12124
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260789
Gbrowse : chrX:9130833-9137237 (-) // 100.0 //
Probeset : 1641346_at
Accessions : protein= NP_572548;, nucleotide= NM_132320;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0260789.
BioGrid reports that CG12124 interacts with CG13167 CG18067 CG2199 CG3885 CG3948 CG5028 CG5272 CG5670 CG6416 CG6611 CG8977 .
TRiP has 2 RNAi stocks for FBgn0260789 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260789 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 34 of 4 0.80None
Head22 44 of 4 0.30Down
Eye22 24 of 4 0.33Down
Thoracicoabdominal ganglion38 24 of 4 0.60None
Salivary gland44 54 of 4 0.64None
Crop30 24 of 4 0.40Down
Midgut22 12 of 4 0.30Down
Tubule27 23 of 4 0.40Down
Hindgut23 04 of 4 0.30Down
Heart17 13 of 4 0.25Down
Fat body33 84 of 4 0.49Down
Ovary268 64 of 4 3.90Up
Testis18 04 of 4 0.30Down
Male accessory glands26 34 of 4 0.40Down
Virgin spermatheca14 33 of 4 0.21Down
Mated spermatheca19 12 of 4 0.28Down
Adult carcass27 22 of 4 0.40Down
Larval CNS190 154 of 4 2.76Up
Larval Salivary gland67 24 of 4 0.98None
Larval midgut25 23 of 4 0.37Down
Larval tubule28 14 of 4 0.40Down
Larval hindgut33 24 of 4 0.48Down
Larval fat body31 61 of 4 0.50Down
Larval trachea71 214 of 4 1.04None
Larval carcass40 14 of 4 0.59None
S2 cells (growing)108 34 of 4 1.58Up
Whole fly69 114 of 4

Looking for FBgn0260789. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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