FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260793 through 18771 annotations produced 3 hits

CG17319 (2mit):

Annotation Number : CG17319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260793
Gbrowse : chr3R:8951832-8954271 (-) // 100.0 //
Probeset : 1628212_at
Accessions : protein= NP_650258;, nucleotide= NM_142001;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0260793.
BioGrid reports that CG17319 interacts with CG1963 CG4800 .
TRiP has 1 RNAi stocks for FBgn0260793 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260793 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 1	2 of 4	1.70	None
Head	4 ± 1	0 of 4	0.80	None
Eye	3 ± 1	0 of 4	0.66	None
Thoracicoabdominal ganglion	6 ± 2	0 of 4	1.20	None
Salivary gland	8 ± 4	0 of 4	1.68	None
Crop	5 ± 1	0 of 4	1.00	None
Midgut	2 ± 0	0 of 4	0.40	None
Tubule	3 ± 0	0 of 4	0.70	Down
Hindgut	4 ± 1	0 of 4	0.80	None
Heart	2 ± 1	0 of 4	0.50	None
Fat body	6 ± 5	0 of 4	1.28	None
Ovary	4 ± 2	1 of 4	0.90	None
Testis	2 ± 0	0 of 4	0.50	None
Male accessory glands	9 ± 2	0 of 4	1.80	None
Virgin spermatheca	10 ± 2	0 of 4	1.91	None
Mated spermatheca	4 ± 1	0 of 4	0.88	None
Adult carcass	7 ± 2	0 of 4	1.40	None
Larval CNS	5 ± 1	0 of 4	1.00	None
Larval Salivary gland	6 ± 0	0 of 4	1.31	None
Larval midgut	1 ± 0	0 of 4	0.37	None
Larval tubule	4 ± 2	0 of 4	0.90	None
Larval hindgut	7 ± 2	0 of 4	1.42	None
Larval fat body	12 ± 2	0 of 4	2.30	None
Larval trachea	2 ± 1	0 of 4	0.45	None
Larval carcass	5 ± 1	0 of 4	1.12	None
S2 cells (growing)	3 ± 1	0 of 4	0.66	None
Whole fly	5 ± 2	1 of 4

CG17319 (2mit):

Annotation Number : CR_tc_LP11739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260793
Gbrowse : chr3R:8958142-8981386 (-) // 99.1 //
Probeset : 1627258_at
Accessions : protein= NP_650258;, nucleotide= NM_142001;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0260793.
TRiP has 1 RNAi stocks for FBgn0260793 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260793 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	246 ± 11	4 of 4	35.50	Up
Head	31 ± 6	4 of 4	4.60	Up
Eye	35 ± 4	4 of 4	5.18	Up
Thoracicoabdominal ganglion	199 ± 12	4 of 4	28.80	Up
Salivary gland	10 ± 4	0 of 4	1.49	None
Crop	5 ± 2	1 of 4	0.80	None
Midgut	4 ± 1	0 of 4	0.70	None
Tubule	4 ± 0	0 of 4	0.70	Down
Hindgut	1 ± 0	0 of 4	0.20	Down
Heart	3 ± 1	0 of 4	0.52	None
Fat body	12 ± 6	0 of 4	1.86	None
Ovary	1 ± 0	0 of 4	0.20	Down
Testis	2 ± 1	0 of 4	0.30	Down
Male accessory glands	10 ± 3	0 of 4	1.50	None
Virgin spermatheca	10 ± 2	2 of 4	1.52	None
Mated spermatheca	11 ± 4	2 of 4	1.61	None
Adult carcass	3 ± 2	0 of 4	0.50	None
Larval CNS	99 ± 4	4 of 4	14.37	Up
Larval Salivary gland	7 ± 1	0 of 4	1.02	None
Larval midgut	2 ± 0	0 of 4	0.33	Down
Larval tubule	5 ± 1	0 of 4	0.80	None
Larval hindgut	2 ± 0	0 of 4	0.31	Down
Larval fat body	1 ± 0	0 of 4	0.20	Down
Larval trachea	7 ± 4	2 of 4	1.06	None
Larval carcass	3 ± 1	0 of 4	0.55	None
S2 cells (growing)	2 ± 1	0 of 4	0.39	Down
Whole fly	6 ± 1	2 of 4

CG17319 (2mit):

Annotation Number : CG10148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260793
Gbrowse : chr3R:8956957-8958057 (-) // 100.0 //
Probeset : 1625408_at
Accessions : protein= NP_650258;, nucleotide= NM_142001;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0260793.
TRiP has 1 RNAi stocks for FBgn0260793 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260793 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	2.80	None
Head	1 ± 0	0 of 4	0.80	None
Eye	2 ± 1	0 of 4	1.07	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	1.80	None
Salivary gland	10 ± 6	0 of 4	5.15	None
Crop	2 ± 1	0 of 4	1.40	None
Midgut	3 ± 1	0 of 4	1.80	None
Tubule	4 ± 1	0 of 4	2.10	None
Hindgut	1 ± 0	0 of 4	0.70	None
Heart	1 ± 0	0 of 4	0.65	None
Fat body	0 ± 0	0 of 4	0.42	None
Ovary	1 ± 1	0 of 4	0.90	None
Testis	1 ± 0	0 of 4	0.60	None
Male accessory glands	9 ± 3	0 of 4	4.40	None
Virgin spermatheca	0 ± 0	0 of 4	0.31	None
Mated spermatheca	2 ± 1	0 of 4	1.30	None
Adult carcass	2 ± 0	0 of 4	1.00	None
Larval CNS	0 ± 0	0 of 4	0.44	None
Larval Salivary gland	1 ± 0	0 of 4	0.62	None
Larval midgut	4 ± 2	0 of 4	2.43	None
Larval tubule	2 ± 1	0 of 4	1.10	None
Larval hindgut	2 ± 0	0 of 4	1.11	None
Larval fat body	1 ± 0	0 of 4	0.70	None
Larval trachea	1 ± 2	0 of 4	0.75	None
Larval carcass	4 ± 1	0 of 4	2.26	None
S2 cells (growing)	0 ± 0	0 of 4	0.40	None
Whole fly	2 ± 0	0 of 4

Looking for FBgn0260793. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720