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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260794 through 18771 annotations produced 2 hits



CG17735 (CG42574):

Annotation Number : CG17735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260794
Gbrowse : chr3R:612766-621516 (-) // 100.0 //
Probeset : 1624385_at
Accessions : protein= NP_649496;, nucleotide= NM_141239;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005488 // binding // inferred f
FlyMine data for FBgn0260794.
Homophila reports that CG17735 is a close match (3e-20) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
TRiP has 2 RNAi stocks for FBgn0260794 available for purchase.
VDRC has 10 RNAi stocks for FBgn0260794 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain235 ± 74 of 4 0.80Down
Head156 ± 114 of 4 0.50Down
Eye86 ± 64 of 4 0.31Down
Thoracicoabdominal ganglion166 ± 44 of 4 0.60Down
Salivary gland260 ± 114 of 4 0.92None
Crop238 ± 164 of 4 0.80None
Midgut258 ± 94 of 4 0.90None
Tubule171 ± 54 of 4 0.60Down
Hindgut180 ± 54 of 4 0.60Down
Heart175 ± 144 of 4 0.62Down
Fat body270 ± 224 of 4 0.95None
Ovary675 ± 94 of 4 2.40Up
Testis211 ± 84 of 4 0.70Down
Male accessory glands242 ± 84 of 4 0.90None
Virgin spermatheca97 ± 94 of 4 0.34Down
Mated spermatheca103 ± 44 of 4 0.36Down
Adult carcass171 ± 124 of 4 0.60Down
Larval CNS355 ± 364 of 4 1.25Up
Larval Salivary gland290 ± 144 of 4 1.03None
Larval midgut234 ± 164 of 4 0.83None
Larval tubule427 ± 124 of 4 1.50Up
Larval hindgut300 ± 164 of 4 1.06None
Larval fat body286 ± 254 of 4 1.00None
Larval trachea173 ± 234 of 4 0.61Down
Larval carcass331 ± 264 of 4 1.17None
S2 cells (growing)368 ± 44 of 4 1.30Up
Whole fly283 ± 144 of 4



CG17735 (CG42574):

Annotation Number : CG14656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260794
Gbrowse : chr3R:622112-627445 (-) // 100.0 //
Probeset : 1624574_at
Accessions : protein= NP_649496;, nucleotide= NM_141239;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005488 // binding // inferred f
FlyMine data for FBgn0260794.
BioGrid reports that CG14656 interacts with CG4167 .
TRiP has 2 RNAi stocks for FBgn0260794 available for purchase.
VDRC has 10 RNAi stocks for FBgn0260794 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 24 of 4 4.00None
Head8 ± 14 of 4 1.70Up
Eye17 ± 14 of 4 3.64Up
Thoracicoabdominal ganglion7 ± 11 of 4 1.60None
Salivary gland6 ± 20 of 4 1.32None
Crop5 ± 12 of 4 1.10None
Midgut11 ± 21 of 4 2.30None
Tubule5 ± 00 of 4 1.20Up
Hindgut8 ± 01 of 4 1.70Up
Heart54 ± 54 of 411.21Up
Fat body8 ± 13 of 4 1.71Up
Ovary4 ± 02 of 4 0.80None
Testis4 ± 00 of 4 0.80None
Male accessory glands11 ± 21 of 4 2.30None
Virgin spermatheca7 ± 11 of 4 1.55None
Mated spermatheca4 ± 12 of 4 1.01None
Adult carcass11 ± 22 of 4 2.50None
Larval CNS5 ± 13 of 4 1.04None
Larval Salivary gland3 ± 00 of 4 0.68None
Larval midgut7 ± 00 of 4 1.60Up
Larval tubule4 ± 12 of 4 0.90None
Larval hindgut4 ± 12 of 4 0.83None
Larval fat body7 ± 30 of 4 1.60None
Larval trachea4 ± 10 of 4 0.87None
Larval carcass7 ± 02 of 4 1.62Up
S2 cells (growing)4 ± 01 of 4 1.02None
Whole fly4 ± 00 of 4

Looking for FBgn0260794. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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