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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260795 through 18771 annotations produced 1 hits



CG7628 (CG42575):

Annotation Number : CG7628
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260795
Gbrowse : chr3L:11122448-11127774 (+) // 100.0 //
Probeset : 1626044_at
Accessions : protein= NP_648441;, nucleotide= NM_140184;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005315 // inorganic phosphate transmembrane transporter activity // inferred from electronic annotation /// 0005515 //
FlyMine data for FBgn0260795.
TRiP has 2 RNAi stocks for FBgn0260795 available for purchase.
VDRC has 4 RNAi stocks for FBgn0260795 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2075 794 of 4 5.50Up
Head989 804 of 4 2.60Up
Eye973 684 of 4 2.57Up
Thoracicoabdominal ganglion2449 554 of 4 6.50Up
Salivary gland17 32 of 4 0.05Down
Crop478 414 of 4 1.30None
Midgut53 14 of 4 0.10Down
Tubule25 73 of 4 0.10Down
Hindgut221 84 of 4 0.60Down
Heart271 304 of 4 0.72None
Fat body33 104 of 4 0.09Down
Ovary755 154 of 4 2.00Up
Testis43 24 of 4 0.10Down
Male accessory glands94 64 of 4 0.20Down
Virgin spermatheca23 14 of 4 0.06Down
Mated spermatheca18 34 of 4 0.05Down
Adult carcass96 74 of 4 0.30Down
Larval CNS1970 714 of 4 5.20Up
Larval Salivary gland72 164 of 4 0.19Down
Larval midgut81 84 of 4 0.21Down
Larval tubule9 01 of 4 0.00Down
Larval hindgut447 1734 of 4 1.18None
Larval fat body21 34 of 4 0.10Down
Larval trachea193 984 of 4 0.51Down
Larval carcass543 754 of 4 1.43None
S2 cells (growing)3 02 of 4 0.01Down
Whole fly379 314 of 4

Looking for FBgn0260795. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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