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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260798 through 18771 annotations produced 1 hits



rhodopsin kinase (Gprk1):

Annotation Number : CG40129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260798
Gbrowse : chr2R:209931-266663 (-) // 100.0 //
Probeset : 1630514_at
Accessions : protein= NP_001036438; /// NP_001163051;, nucleotide= NM_001042973; /// NM_001169580;
Pathway : visible light // inferred from mutant phenotype /// 0008277 // regulation of G-protein coupled receptor protein signali
FlyMine data for FBgn0260798.
Homophila reports that CG40129 is a close match (6e-11) to human gene PHA2B;PRKWNK4;WNK4 (NP_115763), a gene associated with Pseudohypoaldosteronism type II, 145260 (3).
TRiP has 2 RNAi stocks for FBgn0260798 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain636 ± 124 of 4 3.10Up
Head355 ± 314 of 4 1.70Up
Eye337 ± 144 of 4 1.63Up
Thoracicoabdominal ganglion586 ± 194 of 4 2.80Up
Salivary gland218 ± 194 of 4 1.06None
Crop337 ± 104 of 4 1.60Up
Midgut106 ± 34 of 4 0.50Down
Tubule121 ± 84 of 4 0.60Down
Hindgut215 ± 54 of 4 1.00None
Heart157 ± 94 of 4 0.76Down
Fat body140 ± 144 of 4 0.68Down
Ovary398 ± 64 of 4 1.90Up
Testis53 ± 24 of 4 0.30Down
Male accessory glands188 ± 64 of 4 0.90None
Virgin spermatheca142 ± 84 of 4 0.69Down
Mated spermatheca172 ± 114 of 4 0.84None
Adult carcass137 ± 44 of 4 0.70Down
Larval CNS735 ± 944 of 4 3.57Up
Larval Salivary gland177 ± 54 of 4 0.86Down
Larval midgut143 ± 34 of 4 0.69Down
Larval tubule202 ± 84 of 4 1.00None
Larval hindgut261 ± 74 of 4 1.27Up
Larval fat body144 ± 154 of 4 0.70Down
Larval trachea267 ± 84 of 4 1.30Up
Larval carcass195 ± 54 of 4 0.95None
S2 cells (growing)363 ± 144 of 4 1.76Up
Whole fly206 ± 74 of 4

Looking for FBgn0260798. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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