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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260799 through 18771 annotations produced 1 hits



p120 catenin (p120ctn):

Annotation Number : CG17484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260799
Gbrowse : chr2R:482797-496807 (+) // 100.0 //
Probeset : 1635501_at
Accessions : protein= NP_001036443; /// NP_001036444;, nucleotide= NM_001042978; /// NM_001042979;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005912 /
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0260799.
Homophila reports that CG17484 is a close match (2e-44) to human gene PKP1 (NP_000290), a gene associated with Ectodermal dysplasia/skin fragility syndrome, 604536 (3).
BioGrid reports that CG17484 interacts with CG9368 CG11579 CG3722 CG8416 CG11579 CG3722 Dmel CG14425 .
VDRC has 1 RNAi stocks for FBgn0260799 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1059 ± 474 of 4 2.50Up
Head781 ± 514 of 4 1.80Up
Eye1675 ± 634 of 4 3.89Up
Thoracicoabdominal ganglion1209 ± 144 of 4 2.80Up
Salivary gland147 ± 94 of 4 0.34Down
Crop440 ± 204 of 4 1.00None
Midgut212 ± 114 of 4 0.50Down
Tubule153 ± 54 of 4 0.40Down
Hindgut367 ± 124 of 4 0.90Down
Heart333 ± 114 of 4 0.77Down
Fat body259 ± 104 of 4 0.60Down
Ovary794 ± 174 of 4 1.80Up
Testis165 ± 34 of 4 0.40Down
Male accessory glands153 ± 64 of 4 0.40Down
Virgin spermatheca415 ± 324 of 4 0.96None
Mated spermatheca436 ± 134 of 4 1.01None
Adult carcass220 ± 114 of 4 0.50Down
Larval CNS1104 ± 594 of 4 2.57Up
Larval Salivary gland308 ± 114 of 4 0.72Down
Larval midgut258 ± 74 of 4 0.60Down
Larval tubule407 ± 104 of 4 0.90None
Larval hindgut599 ± 104 of 4 1.39Up
Larval fat body697 ± 524 of 4 1.60Up
Larval trachea621 ± 404 of 4 1.44Up
Larval carcass396 ± 244 of 4 0.92None
S2 cells (growing)609 ± 64 of 4 1.42Up
Whole fly430 ± 134 of 4

Looking for FBgn0260799. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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