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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260856 through 18771 annotations produced 1 hits



membrin (membrin):

Annotation Number : CG4780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260856
Gbrowse : chr3L:5359584-5360418 (+) // 100.0 //
Probeset : 1624027_at
Accessions : protein= NP_647960;, nucleotide= NM_139703;
Pathway : engulfment // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation //
Interpro : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequenc
FlyMine data for FBgn0260856.
VDRC has 3 RNAi stocks for FBgn0260856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain80 ± 24 of 4 0.80None
Head68 ± 04 of 4 0.70Down
Eye124 ± 34 of 4 1.29Up
Thoracicoabdominal ganglion88 ± 54 of 4 0.90None
Salivary gland490 ± 284 of 4 5.07Up
Crop100 ± 34 of 4 1.00None
Midgut99 ± 74 of 4 1.00None
Tubule89 ± 124 of 4 0.90None
Hindgut74 ± 64 of 4 0.80Down
Heart83 ± 24 of 4 0.86None
Fat body73 ± 94 of 4 0.76Down
Ovary156 ± 84 of 4 1.60Up
Testis146 ± 34 of 4 1.50Up
Male accessory glands394 ± 144 of 4 4.10Up
Virgin spermatheca137 ± 24 of 4 1.42Up
Mated spermatheca175 ± 134 of 4 1.81Up
Adult carcass72 ± 64 of 4 0.70Down
Larval CNS115 ± 44 of 4 1.19None
Larval Salivary gland890 ± 884 of 4 9.20Up
Larval midgut109 ± 84 of 4 1.13None
Larval tubule92 ± 34 of 4 1.00None
Larval hindgut116 ± 84 of 4 1.20None
Larval fat body141 ± 134 of 4 1.50Up
Larval trachea135 ± 224 of 4 1.40Up
Larval carcass128 ± 64 of 4 1.33Up
S2 cells (growing)133 ± 24 of 4 1.38Up
Whole fly96 ± 64 of 4

Looking for FBgn0260856. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime