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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260859 through 18771 annotations produced 1 hits



CG3911 (Bet3):

Annotation Number : CG3911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260859
Gbrowse : chr3L:9432018-9435353 (-) // 100.0 //
Probeset : 1629088_at
Accessions : protein= NP_648312;, nucleotide= NM_140055;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0030008 // TRAPP complex // inferred from sequence or structural
Interpro : 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred
FlyMine data for FBgn0260859.
BioGrid reports that CG3911 interacts with CG7176 CG7461 CG6005 CG7014 CG8922 Dmel CG40084 .
TRiP has 1 RNAi stocks for FBgn0260859 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260859 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 34 of 4 1.50Up
Head89 44 of 4 1.00None
Eye100 24 of 4 1.08None
Thoracicoabdominal ganglion127 54 of 4 1.40Up
Salivary gland135 104 of 4 1.46Up
Crop127 64 of 4 1.40Up
Midgut87 24 of 4 0.90None
Tubule34 14 of 4 0.40Down
Hindgut102 34 of 4 1.10None
Heart131 54 of 4 1.41Up
Fat body85 104 of 4 0.92None
Ovary195 44 of 4 2.10Up
Testis95 44 of 4 1.00None
Male accessory glands155 54 of 4 1.70Up
Virgin spermatheca62 24 of 4 0.67Down
Mated spermatheca57 64 of 4 0.62Down
Adult carcass85 64 of 4 0.90None
Larval CNS105 44 of 4 1.14Up
Larval Salivary gland165 94 of 4 1.79Up
Larval midgut45 24 of 4 0.49Down
Larval tubule150 44 of 4 1.60Up
Larval hindgut92 34 of 4 0.99None
Larval fat body157 104 of 4 1.70Up
Larval trachea159 74 of 4 1.72Up
Larval carcass70 44 of 4 0.76Down
S2 cells (growing)109 24 of 4 1.18Up
Whole fly92 34 of 4

Looking for FBgn0260859. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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