FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260859 through 18771 annotations produced 1 hits

CG3911 (Bet3):

Annotation Number : CG3911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260859
Gbrowse : chr3L:9432018-9435353 (-) // 100.0 //
Probeset : 1629088_at
Accessions : protein= NP_648312;, nucleotide= NM_140055;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0030008 // TRAPP complex // inferred from sequence or structural
Interpro : 0004383 // guanylate cyclase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred
FlyMine data for FBgn0260859.
BioGrid reports that CG3911 interacts with CG7176 CG7461 CG6005 CG7014 CG8922 Dmel CG40084 .
TRiP has 1 RNAi stocks for FBgn0260859 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260859 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	135 ± 3	4 of 4	1.50	Up
Head	89 ± 4	4 of 4	1.00	None
Eye	100 ± 2	4 of 4	1.08	None
Thoracicoabdominal ganglion	127 ± 5	4 of 4	1.40	Up
Salivary gland	135 ± 10	4 of 4	1.46	Up
Crop	127 ± 6	4 of 4	1.40	Up
Midgut	87 ± 2	4 of 4	0.90	None
Tubule	34 ± 1	4 of 4	0.40	Down
Hindgut	102 ± 3	4 of 4	1.10	None
Heart	131 ± 5	4 of 4	1.41	Up
Fat body	85 ± 10	4 of 4	0.92	None
Ovary	195 ± 4	4 of 4	2.10	Up
Testis	95 ± 4	4 of 4	1.00	None
Male accessory glands	155 ± 5	4 of 4	1.70	Up
Virgin spermatheca	62 ± 2	4 of 4	0.67	Down
Mated spermatheca	57 ± 6	4 of 4	0.62	Down
Adult carcass	85 ± 6	4 of 4	0.90	None
Larval CNS	105 ± 4	4 of 4	1.14	Up
Larval Salivary gland	165 ± 9	4 of 4	1.79	Up
Larval midgut	45 ± 2	4 of 4	0.49	Down
Larval tubule	150 ± 4	4 of 4	1.60	Up
Larval hindgut	92 ± 3	4 of 4	0.99	None
Larval fat body	157 ± 10	4 of 4	1.70	Up
Larval trachea	159 ± 7	4 of 4	1.72	Up
Larval carcass	70 ± 4	4 of 4	0.76	Down
S2 cells (growing)	109 ± 2	4 of 4	1.18	Up
Whole fly	92 ± 3	4 of 4

Looking for FBgn0260859. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720