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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260860 through 18771 annotations produced 1 hits



Bet5 (Bet5):

Annotation Number : CG1359
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260860
Gbrowse : chr3R:26006003-26006743 (+) // 100.0 //
Probeset : 1624380_at
Accessions : protein= NP_651778;, nucleotide= NM_143521;
Pathway : 0005801 // cis-Golgi network // inferred from electronic annotation /// 0030008 // TRAPP complex // inferred from sequen
FlyMine data for FBgn0260860.
TRiP has 1 RNAi stocks for FBgn0260860 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260860 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain285 ± 44 of 4 2.00Up
Head229 ± 104 of 4 1.60Up
Eye382 ± 154 of 4 2.72Up
Thoracicoabdominal ganglion268 ± 94 of 4 1.90Up
Salivary gland466 ± 114 of 4 3.32Up
Crop178 ± 84 of 4 1.30Up
Midgut220 ± 64 of 4 1.60Up
Tubule62 ± 14 of 4 0.40Down
Hindgut219 ± 94 of 4 1.60Up
Heart173 ± 104 of 4 1.24None
Fat body178 ± 194 of 4 1.27Up
Ovary186 ± 64 of 4 1.30Up
Testis47 ± 24 of 4 0.30Down
Male accessory glands312 ± 104 of 4 2.20Up
Virgin spermatheca108 ± 14 of 4 0.77None
Mated spermatheca102 ± 64 of 4 0.73Down
Adult carcass132 ± 114 of 4 0.90None
Larval CNS288 ± 194 of 4 2.05Up
Larval Salivary gland356 ± 164 of 4 2.54Up
Larval midgut189 ± 64 of 4 1.35Up
Larval tubule292 ± 74 of 4 2.10Up
Larval hindgut196 ± 114 of 4 1.39Up
Larval fat body312 ± 354 of 4 2.20Up
Larval trachea303 ± 234 of 4 2.16Up
Larval carcass170 ± 34 of 4 1.21None
S2 cells (growing)364 ± 34 of 4 2.59Up
Whole fly140 ± 114 of 4

Looking for FBgn0260860. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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