FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260861 through 18771 annotations produced 1 hits

Trs23 (Trs23):

Annotation Number : CG9298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260861
Gbrowse : chr2L:8686279-8687034 (+) // 100.0 //
Probeset : 1641214_at
Accessions : protein= NP_609247;, nucleotide= NM_135403;
Pathway : 0005801 // cis-Golgi network // inferred from electronic annotation /// 0030008 // TRAPP complex // inferred from sequen
FlyMine data for FBgn0260861.
TRiP has 1 RNAi stocks for FBgn0260861 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260861 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	167 ± 2	4 of 4	1.60	Up
Head	123 ± 2	4 of 4	1.20	Up
Eye	208 ± 11	4 of 4	2.06	Up
Thoracicoabdominal ganglion	190 ± 4	4 of 4	1.90	Up
Salivary gland	204 ± 7	4 of 4	2.02	Up
Crop	98 ± 2	4 of 4	1.00	None
Midgut	90 ± 3	4 of 4	0.90	None
Tubule	161 ± 5	4 of 4	1.60	Up
Hindgut	123 ± 2	4 of 4	1.20	Up
Heart	141 ± 7	4 of 4	1.39	Up
Fat body	76 ± 11	4 of 4	0.75	Down
Ovary	168 ± 2	4 of 4	1.70	Up
Testis	73 ± 2	4 of 4	0.70	Down
Male accessory glands	148 ± 2	4 of 4	1.50	Up
Virgin spermatheca	84 ± 1	4 of 4	0.84	Down
Mated spermatheca	98 ± 2	4 of 4	0.97	None
Adult carcass	89 ± 3	4 of 4	0.90	Down
Larval CNS	132 ± 8	4 of 4	1.30	Up
Larval Salivary gland	142 ± 7	4 of 4	1.41	Up
Larval midgut	82 ± 2	4 of 4	0.81	Down
Larval tubule	130 ± 3	4 of 4	1.30	Up
Larval hindgut	93 ± 2	4 of 4	0.92	None
Larval fat body	103 ± 8	4 of 4	1.00	None
Larval trachea	155 ± 13	4 of 4	1.53	Up
Larval carcass	90 ± 4	4 of 4	0.89	None
S2 cells (growing)	153 ± 4	4 of 4	1.52	Up
Whole fly	101 ± 2	4 of 4

Looking for FBgn0260861. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720