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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260866 through 18771 annotations produced 1 hits



defense repressor 1 (dnr1):

Annotation Number : CG12489
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260866
Gbrowse : chr2R:18451015-18480473 (-) // 99.88 //
Probeset : 1626336_at
Accessions : protein= NP_611680;, nucleotide= NM_137836;
Pathway : 0005856 // cytoskeleton // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0260866.
VDRC has 2 RNAi stocks for FBgn0260866 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 44 of 4 1.20None
Head126 114 of 4 1.80Up
Eye203 214 of 4 2.97Up
Thoracicoabdominal ganglion57 44 of 4 0.80None
Salivary gland149 214 of 4 2.19Up
Crop165 124 of 4 2.40Up
Midgut152 44 of 4 2.20Up
Tubule73 24 of 4 1.10None
Hindgut131 24 of 4 1.90Up
Heart66 44 of 4 0.97None
Fat body42 74 of 4 0.62Down
Ovary62 34 of 4 0.90None
Testis25 24 of 4 0.40Down
Male accessory glands169 84 of 4 2.50Up
Virgin spermatheca27 34 of 4 0.40Down
Mated spermatheca24 04 of 4 0.36Down
Adult carcass74 74 of 4 1.10None
Larval CNS32 34 of 4 0.47Down
Larval Salivary gland79 74 of 4 1.15None
Larval midgut96 104 of 4 1.41None
Larval tubule93 44 of 4 1.40Up
Larval hindgut93 94 of 4 1.37None
Larval fat body53 54 of 4 0.80None
Larval trachea89 124 of 4 1.31Up
Larval carcass54 74 of 4 0.80None
S2 cells (growing)20 24 of 4 0.30Down
Whole fly68 54 of 4

Looking for FBgn0260866. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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