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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260874 through 18771 annotations produced 1 hits



Ionotropic receptor 76a (Ir76a):

Annotation Number : CG8533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260874
Gbrowse : chr3L:19794438-19796526 (+) // 100.0 //
Probeset : 1633880_s_at
Accessions : protein= NP_001097647; /// NP_001137982; /// NP_649148; /// NP_730452; /// NP_730453;, nucleotide= NM_001104177; /// NM_001104177; /// NM_001144510; /// NM_140891; /// NM_168817; /// NM_168818;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0260874.
TRiP has 1 RNAi stocks for FBgn0260874 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260874 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 ± 54 of 4 6.60Up
Head35 ± 44 of 4 2.00Up
Eye33 ± 34 of 4 1.95Up
Thoracicoabdominal ganglion81 ± 84 of 4 4.80Up
Salivary gland35 ± 63 of 4 2.09None
Crop38 ± 53 of 4 2.30Up
Midgut13 ± 10 of 4 0.80None
Tubule7 ± 10 of 4 0.50Down
Hindgut16 ± 00 of 4 1.00None
Heart20 ± 04 of 4 1.19None
Fat body22 ± 20 of 4 1.34None
Ovary26 ± 44 of 4 1.50None
Testis21 ± 04 of 4 1.20None
Male accessory glands67 ± 164 of 4 3.90None
Virgin spermatheca22 ± 24 of 4 1.28None
Mated spermatheca25 ± 24 of 4 1.51None
Adult carcass19 ± 30 of 4 1.20None
Larval CNS27 ± 113 of 4 1.62None
Larval Salivary gland28 ± 22 of 4 1.65Up
Larval midgut15 ± 10 of 4 0.92None
Larval tubule6 ± 20 of 4 0.40Down
Larval hindgut10 ± 10 of 4 0.60None
Larval fat body12 ± 20 of 4 0.70None
Larval trachea20 ± 54 of 4 1.17None
Larval carcass15 ± 20 of 4 0.91None
S2 cells (growing)103 ± 24 of 4 6.06Up
Whole fly17 ± 22 of 4

Looking for FBgn0260874. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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