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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260932 through 18771 annotations produced 1 hits



cutoff (cuff):

Annotation Number : CG13190
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260932
Gbrowse : chr2R:7773615-7775012 (+) // 100.0 //
Probeset : 1626928_at
Accessions : protein= NP_610709;, nucleotide= NM_136865;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0260932.
BioGrid reports that CG13190 interacts with CG9252 .
TRiP has 2 RNAi stocks for FBgn0260932 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260932 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 01 of 4 0.20Down
Head2 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion3 ± 11 of 4 0.20Down
Salivary gland11 ± 20 of 4 0.51Down
Crop6 ± 12 of 4 0.30Down
Midgut49 ± 44 of 4 2.30Up
Tubule24 ± 04 of 4 1.10Up
Hindgut8 ± 04 of 4 0.40Down
Heart2 ± 00 of 4 0.13Down
Fat body2 ± 10 of 4 0.13Down
Ovary45 ± 44 of 4 2.10Up
Testis28 ± 14 of 4 1.30Up
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 00 of 4 0.11Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass4 ± 10 of 4 0.20Down
Larval CNS43 ± 34 of 4 1.97Up
Larval Salivary gland3 ± 00 of 4 0.14Down
Larval midgut12 ± 14 of 4 0.57Down
Larval tubule8 ± 00 of 4 0.40Down
Larval hindgut7 ± 04 of 4 0.33Down
Larval fat body10 ± 31 of 4 0.50Down
Larval trachea6 ± 21 of 4 0.29Down
Larval carcass7 ± 12 of 4 0.36Down
S2 cells (growing)17 ± 14 of 4 0.79None
Whole fly22 ± 24 of 4

Looking for FBgn0260932. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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