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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260934 through 18771 annotations produced 3 hits



Par-1 kinase (par-1):

Annotation Number : CG30132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260934
Gbrowse : chr2R:15350488-15370547 (+) // 100.0 //
Probeset : 1625561_s_at
Accessions : protein= NP_001014539; /// NP_001014540; /// NP_001014541; /// NP_001014542; /// NP_001163208; /// NP_001163209; /// NP_001163210; /// NP_001163211; /// NP_995890; /// NP_995891; /// NP_995892; /// NP_995893; /// NP_995894; /// NP_995895; /// NP_995896; /// NP_995897; /// NP_995898; /// NP_995899; /// NP_995900;, nucleotide= NM_001014539; /// NM_001014540; /// NM_001014541; /// NM_001014542; /// NM_001169737; /// NM_001169738; /// NM_001169739; /// NM_001169740; /// NM_206168; /// NM_206169; /// NM_206170; /// NM_206171; /// NM_206172; /// NM_206173; /// NM_206174; /// NM_206175; /// NM_206176; /// NM_206177; /// NM_206178;
Pathway : 0005694 // chromosome // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay //
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0260934.
TRiP has 2 RNAi stocks for FBgn0260934 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260934 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 04 of 4 2.10None
Head3 00 of 4 0.70None
Eye4 11 of 4 0.95None
Thoracicoabdominal ganglion8 22 of 4 1.70None
Salivary gland5 20 of 4 1.09None
Crop8 11 of 4 1.90None
Midgut4 10 of 4 1.00None
Tubule3 00 of 4 0.80None
Hindgut5 00 of 4 1.10None
Heart4 10 of 4 1.05None
Fat body7 21 of 4 1.53None
Ovary1 00 of 4 0.30None
Testis4 00 of 4 1.00None
Male accessory glands3 10 of 4 0.70None
Virgin spermatheca2 10 of 4 0.46None
Mated spermatheca3 10 of 4 0.79None
Adult carcass5 10 of 4 1.20None
Larval CNS3 22 of 4 0.78None
Larval Salivary gland8 11 of 4 1.88None
Larval midgut3 10 of 4 0.76None
Larval tubule7 02 of 4 1.70None
Larval hindgut4 10 of 4 0.89None
Larval fat body5 20 of 4 1.30None
Larval trachea3 20 of 4 0.78None
Larval carcass1 00 of 4 0.34None
S2 cells (growing)4 00 of 4 0.89None
Whole fly4 11 of 4



Par-1 kinase (par-1):

Annotation Number : S.C2R002042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260934
Gbrowse : chr2R:15371296-15371608 (+) // 100.0 //
Probeset : 1625544_s_at
Accessions : protein= NP_001014539; /// NP_001014540; /// NP_001014541; /// NP_001014542; /// NP_001163208; /// NP_001163209; /// NP_001163210; /// NP_001163211; /// NP_995890; /// NP_995891; /// NP_995892; /// NP_995893; /// NP_995894; /// NP_995895; /// NP_995896; /// NP_995897; /// NP_995898; /// NP_995899; /// NP_995900;, nucleotide= NM_001014539; /// NM_001014540; /// NM_001014541; /// NM_001014542; /// NM_001169737; /// NM_001169738; /// NM_001169739; /// NM_001169740; /// NM_206168; /// NM_206169; /// NM_206170; /// NM_206171; /// NM_206172; /// NM_206173; /// NM_206174; /// NM_206175; /// NM_206176; /// NM_206177; /// NM_206178;
Pathway : 0005694 // chromosome // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay //
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0260934.
TRiP has 2 RNAi stocks for FBgn0260934 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260934 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 24 of 4 2.60Up
Head59 54 of 4 1.30None
Eye28 04 of 4 0.61Down
Thoracicoabdominal ganglion77 84 of 4 1.70Up
Salivary gland45 44 of 4 0.98None
Crop92 04 of 4 2.00Up
Midgut22 14 of 4 0.50Down
Tubule63 34 of 4 1.40Up
Hindgut89 44 of 4 1.90Up
Heart38 14 of 4 0.83None
Fat body58 164 of 4 1.28None
Ovary91 24 of 4 2.00Up
Testis13 24 of 4 0.30Down
Male accessory glands26 34 of 4 0.60Down
Virgin spermatheca26 24 of 4 0.59Down
Mated spermatheca18 14 of 4 0.39Down
Adult carcass69 64 of 4 1.50Up
Larval CNS58 54 of 4 1.28Up
Larval Salivary gland59 34 of 4 1.29Up
Larval midgut23 14 of 4 0.52Down
Larval tubule73 24 of 4 1.60Up
Larval hindgut62 34 of 4 1.37Up
Larval fat body50 24 of 4 1.10None
Larval trachea36 84 of 4 0.79None
Larval carcass34 24 of 4 0.76Down
S2 cells (growing)135 54 of 4 2.95Up
Whole fly45 34 of 4



Par-1 kinase (par-1):

Annotation Number : CG30131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260934
Gbrowse : chr2R:15349952-15353274 (+) // 100.0 //
Probeset : 1627121_s_at
Accessions : protein= NP_001014539; /// NP_001014540; /// NP_001014541; /// NP_001014542; /// NP_001163208; /// NP_001163209; /// NP_001163210; /// NP_001163211; /// NP_995890; /// NP_995891; /// NP_995892; /// NP_995893; /// NP_995894; /// NP_995895; /// NP_995896; /// NP_995897; /// NP_995898; /// NP_995899; /// NP_995900;, nucleotide= NM_001014539; /// NM_001014540; /// NM_001014541; /// NM_001014542; /// NM_001169737; /// NM_001169738; /// NM_001169739; /// NM_001169740; /// NM_206168; /// NM_206169; /// NM_206170; /// NM_206171; /// NM_206172; /// NM_206173; /// NM_206174; /// NM_206175; /// NM_206176; /// NM_206177; /// NM_206178;
Pathway : 0005694 // chromosome // inferred from electronic annotation /// 0005938 // cell cortex // inferred from direct assay //
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0260934.
TRiP has 2 RNAi stocks for FBgn0260934 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260934 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 10 of 4 4.90Up
Head7 20 of 4 1.90None
Eye9 32 of 4 2.62None
Thoracicoabdominal ganglion8 40 of 4 2.40None
Salivary gland4 10 of 4 1.32None
Crop22 10 of 4 6.20Up
Midgut10 10 of 4 3.00Up
Tubule13 10 of 4 3.70Up
Hindgut18 00 of 4 5.10Up
Heart5 10 of 4 1.61None
Fat body3 30 of 4 0.99None
Ovary1 00 of 4 0.50None
Testis1 00 of 4 0.30None
Male accessory glands7 20 of 4 2.10None
Virgin spermatheca2 10 of 4 0.74None
Mated spermatheca2 00 of 4 0.56None
Adult carcass6 20 of 4 1.70None
Larval CNS4 20 of 4 1.19None
Larval Salivary gland3 10 of 4 1.08None
Larval midgut2 00 of 4 0.65None
Larval tubule17 10 of 4 4.70Up
Larval hindgut9 20 of 4 2.61None
Larval fat body2 10 of 4 0.80None
Larval trachea5 10 of 4 1.42None
Larval carcass2 10 of 4 0.71None
S2 cells (growing)47 10 of 412.95Up
Whole fly3 10 of 4

Looking for FBgn0260934. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime