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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260936 through 18771 annotations produced 1 hits



scrawny (scny):

Annotation Number : CG5505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260936
Gbrowse : chr3L:5762101-5768948 (+) // 100.0 //
Probeset : 1624348_a_at
Accessions : protein= NP_647986; /// NP_729091; /// NP_729092; /// NP_729093; /// NP_729094; /// NP_729095;, nucleotide= NM_139729; /// NM_168131; /// NM_168132; /// NM_168133; /// NM_168134; /// NM_168135;
Pathway : chitin-based cuticle // inferred from mutant phenotype /// 0016578 // histone deubiquitination // inferred from direct
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay /// 000
FlyMine data for FBgn0260936.
Homophila reports that CG5505 is a close match (7e-12) to human gene DFFRY;USP9Y (NP_004645), a gene associated with Azoospermia, 415000 (3).
TRiP has 4 RNAi stocks for FBgn0260936 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260936 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 ± 64 of 4 1.10None
Head132 ± 44 of 4 0.70Down
Eye183 ± 74 of 4 0.95None
Thoracicoabdominal ganglion161 ± 34 of 4 0.80Down
Salivary gland147 ± 04 of 4 0.76Down
Crop130 ± 34 of 4 0.70Down
Midgut185 ± 34 of 4 1.00None
Tubule130 ± 64 of 4 0.70Down
Hindgut113 ± 34 of 4 0.60Down
Heart313 ± 64 of 4 1.62Up
Fat body328 ± 214 of 4 1.70Up
Ovary269 ± 34 of 4 1.40Up
Testis364 ± 294 of 4 1.90Up
Male accessory glands154 ± 44 of 4 0.80Down
Virgin spermatheca116 ± 64 of 4 0.60Down
Mated spermatheca113 ± 64 of 4 0.59Down
Adult carcass223 ± 134 of 4 1.20None
Larval CNS301 ± 204 of 4 1.56Up
Larval Salivary gland301 ± 104 of 4 1.56Up
Larval midgut268 ± 164 of 4 1.39Up
Larval tubule317 ± 44 of 4 1.60Up
Larval hindgut216 ± 124 of 4 1.12None
Larval fat body231 ± 74 of 4 1.20Up
Larval trachea205 ± 154 of 4 1.06None
Larval carcass298 ± 264 of 4 1.54Up
S2 cells (growing)300 ± 74 of 4 1.55Up
Whole fly193 ± 94 of 4

Looking for FBgn0260936. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime