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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260940 through 18771 annotations produced 1 hits



larsen (lsn):

Annotation Number : CG6637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260940
Gbrowse : chr3R:17690921-17691894 (+) // 100.0 //
Probeset : 1639430_at
Accessions : protein= NP_650987;, nucleotide= NM_142730;
FlyMine data for FBgn0260940.
BioGrid reports that CG6637 interacts with CG8807 .
TRiP has 1 RNAi stocks for FBgn0260940 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 44 of 4 1.40Up
Head102 64 of 4 1.10None
Eye118 64 of 4 1.30Up
Thoracicoabdominal ganglion128 34 of 4 1.40Up
Salivary gland213 74 of 4 2.33Up
Crop108 24 of 4 1.20Up
Midgut101 44 of 4 1.10None
Tubule117 74 of 4 1.30Up
Hindgut109 44 of 4 1.20Up
Heart93 44 of 4 1.02None
Fat body85 54 of 4 0.93None
Ovary105 44 of 4 1.10None
Testis47 14 of 4 0.50Down
Male accessory glands131 64 of 4 1.40Up
Virgin spermatheca113 54 of 4 1.24Up
Mated spermatheca123 94 of 4 1.35Up
Adult carcass91 44 of 4 1.00None
Larval CNS168 164 of 4 1.84Up
Larval Salivary gland149 154 of 4 1.64Up
Larval midgut98 54 of 4 1.08None
Larval tubule153 34 of 4 1.70Up
Larval hindgut96 54 of 4 1.05None
Larval fat body97 84 of 4 1.10None
Larval trachea105 34 of 4 1.15None
Larval carcass92 74 of 4 1.01None
S2 cells (growing)155 04 of 4 1.71Up
Whole fly91 54 of 4

Looking for FBgn0260940. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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