FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260941 through 18771 annotations produced 2 hits

approximated (app):

Annotation Number : CG17144
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260941
Gbrowse : chr3L:12199328-12202440 (-) // 100.0 //
Probeset : 1635248_at
Accessions : protein= NP_001137936; /// NP_001137937; /// NP_001137938; /// NP_001137939; /// NP_648561; /// NP_996065;, nucleotide= NM_001144464; /// NM_001144465; /// NM_001144466; /// NM_001144467; /// NM_140304; /// NM_206343;
Pathway : 0045179 // apical cortex // inferred from direct assay
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0260941.
TRiP has 1 RNAi stocks for FBgn0260941 available for purchase.
VDRC has 3 RNAi stocks for FBgn0260941 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	424 ± 5	4 of 4	3.70	Up
Head	188 ± 20	4 of 4	1.70	Up
Eye	236 ± 24	4 of 4	2.08	Up
Thoracicoabdominal ganglion	393 ± 20	4 of 4	3.50	Up
Salivary gland	29 ± 1	4 of 4	0.26	Down
Crop	624 ± 18	4 of 4	5.50	Up
Midgut	275 ± 7	4 of 4	2.40	Up
Tubule	367 ± 20	4 of 4	3.20	Up
Hindgut	321 ± 17	4 of 4	2.80	Up
Heart	74 ± 7	4 of 4	0.65	Down
Fat body	113 ± 8	4 of 4	1.00	None
Ovary	202 ± 6	4 of 4	1.80	Up
Testis	57 ± 3	4 of 4	0.50	Down
Male accessory glands	173 ± 15	4 of 4	1.50	Up
Virgin spermatheca	238 ± 35	4 of 4	2.10	Up
Mated spermatheca	246 ± 13	4 of 4	2.17	Up
Adult carcass	104 ± 9	4 of 4	0.90	None
Larval CNS	247 ± 28	4 of 4	2.18	Up
Larval Salivary gland	62 ± 9	4 of 4	0.55	Down
Larval midgut	375 ± 22	4 of 4	3.31	Up
Larval tubule	558 ± 36	4 of 4	4.90	Up
Larval hindgut	353 ± 16	4 of 4	3.11	Up
Larval fat body	109 ± 4	4 of 4	1.00	None
Larval trachea	83 ± 8	4 of 4	0.73	Down
Larval carcass	128 ± 7	4 of 4	1.13	None
S2 cells (growing)	139 ± 4	4 of 4	1.23	None
Whole fly	113 ± 8	4 of 4

approximated (app):

Annotation Number : CG5620
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260941
Gbrowse : chr3L:12204730-12213304 (-) // 100.0 //
Probeset : 1639088_at
Accessions : protein= NP_001137936; /// NP_001137937; /// NP_001137938; /// NP_001137939; /// NP_648561; /// NP_996065;, nucleotide= NM_001144464; /// NM_001144465; /// NM_001144466; /// NM_001144467; /// NM_140304; /// NM_206343;
Pathway : 0045179 // apical cortex // inferred from direct assay
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0260941.
Homophila reports that CG5620 is a close match (8e-102) to human gene (NP_057116), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0260941 available for purchase.
VDRC has 3 RNAi stocks for FBgn0260941 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	1.00	None
Head	7 ± 1	3 of 4	1.60	None
Eye	6 ± 1	0 of 4	1.40	None
Thoracicoabdominal ganglion	7 ± 1	0 of 4	1.60	None
Salivary gland	19 ± 2	0 of 4	4.10	Up
Crop	9 ± 2	1 of 4	1.90	None
Midgut	13 ± 2	2 of 4	2.80	Up
Tubule	7 ± 1	0 of 4	1.70	Up
Hindgut	8 ± 2	2 of 4	1.80	None
Heart	3 ± 0	0 of 4	0.71	None
Fat body	11 ± 2	1 of 4	2.45	Up
Ovary	6 ± 1	1 of 4	1.30	None
Testis	9 ± 0	2 of 4	2.00	Up
Male accessory glands	14 ± 1	2 of 4	2.90	Up
Virgin spermatheca	9 ± 0	0 of 4	2.01	Up
Mated spermatheca	12 ± 0	0 of 4	2.56	Up
Adult carcass	13 ± 3	0 of 4	2.80	None
Larval CNS	8 ± 2	2 of 4	1.68	None
Larval Salivary gland	11 ± 1	0 of 4	2.31	Up
Larval midgut	11 ± 1	3 of 4	2.37	Up
Larval tubule	9 ± 1	0 of 4	1.90	Up
Larval hindgut	9 ± 1	2 of 4	1.91	None
Larval fat body	12 ± 3	2 of 4	2.50	None
Larval trachea	8 ± 3	3 of 4	1.73	None
Larval carcass	11 ± 2	0 of 4	2.42	Up
S2 cells (growing)	5 ± 1	0 of 4	1.23	None
Whole fly	4 ± 0	1 of 4

Looking for FBgn0260941. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720