FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260942 through 18771 annotations produced 1 hits

james bond (bond):

Annotation Number : CG6921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260942
Gbrowse : chr3R:18376404-18382216 (+) // 99.63 //
Probeset : 1638324_s_at
Accessions : protein= NP_651062; /// NP_732761; /// NP_732762;, nucleotide= NM_142805; /// NM_170022; /// NM_170023;
Pathway : actomyosin contractile ring assembly // inferred from mutant phenotype /// 0007110 // cytokinesis after meiosis I // in
Interpro : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0260942.
Homophila reports that CG6921 is a close match (1e-43) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
TRiP has 1 RNAi stocks for FBgn0260942 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260942 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 4	4 of 4	0.10	Down
Head	304 ± 15	4 of 4	1.30	Up
Eye	103 ± 8	4 of 4	0.45	Down
Thoracicoabdominal ganglion	20 ± 0	4 of 4	0.10	Down
Salivary gland	979 ± 40	4 of 4	4.26	Up
Crop	3454 ± 133	4 of 4	15.00	Up
Midgut	79 ± 4	4 of 4	0.30	Down
Tubule	31 ± 1	4 of 4	0.10	Down
Hindgut	216 ± 11	4 of 4	0.90	None
Heart	77 ± 8	4 of 4	0.34	Down
Fat body	72 ± 7	4 of 4	0.32	Down
Ovary	75 ± 8	4 of 4	0.30	Down
Testis	457 ± 8	4 of 4	2.00	Up
Male accessory glands	373 ± 37	4 of 4	1.60	Up
Virgin spermatheca	75 ± 5	4 of 4	0.33	Down
Mated spermatheca	106 ± 9	4 of 4	0.46	Down
Adult carcass	99 ± 9	4 of 4	0.40	Down
Larval CNS	26 ± 5	4 of 4	0.12	Down
Larval Salivary gland	26 ± 5	4 of 4	0.11	Down
Larval midgut	46 ± 3	4 of 4	0.20	Down
Larval tubule	10 ± 2	1 of 4	0.00	Down
Larval hindgut	42 ± 1	4 of 4	0.19	Down
Larval fat body	100 ± 42	4 of 4	0.40	Down
Larval trachea	1648 ± 77	4 of 4	7.17	Up
Larval carcass	174 ± 32	4 of 4	0.76	None
S2 cells (growing)	2 ± 0	0 of 4	0.01	Down
Whole fly	230 ± 13	4 of 4

Looking for FBgn0260942. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720